RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 USE1Q9NZ43 259 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 STMN3Q9NZ72 180 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 ANAPC2Q9UJX6 822 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 ANKRD6Q9Y2G4 727 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 MYO9BQ13459 2157 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 SUPT3HB4E1H0 165 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 TISP43B9A030 160 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 TOMM70O94826 608 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 PABPC4LP0CB38 370 aaKnown RBP11.43□□□□□ -0.58
TCOF1-211ENST00000513346 CYP2C8P10632 490 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 PTPRAP18433 802 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 ACO1P21399 889 aaKnown RBP11.43□□□□□ -0.58
TCOF1-211ENST00000513346 MIPP30301 263 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 NAGLUP54802 743 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 EPS8Q12929 822 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 SHROOM1Q2M3G4 852 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-211ENST00000513346 THOC7Q6I9Y2 204 aaKnown RBP11.43□□□□□ -0.58
TCOF1-211ENST00000513346 NCCRP1Q6ZVX7 275 aaPredicted RBP11.43□□□□□ -0.58
TCOF1-211ENST00000513346 AKAP14Q86UN6 197 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 IPMKQ8NFU5 416 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 TRPM4Q8TD43 1214 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 SNX19Q92543 992 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 SLCO2A1Q92959 643 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 VPS33AQ96AX1 596 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 OSMRQ99650 979 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 EGFL8Q99944 293 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 ZNF556Q9HAH1 456 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 SETD4Q9NVD3 440 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 RAP2CQ9Y3L5 183 aa11.43□□□□□ -0.58
TCOF1-211ENST00000513346 FAM25AB3EWG3 89 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 FAM25CB3EWG5 89 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 FAM25GB3EWG6 89 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 FKTNO75072 461 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CSDE1O75534 798 aaKnown RBP11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CRTAMO95727 393 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CALCAP01258 141 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 ODC1P11926 461 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CRHR1P34998 444 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 METTL21CQ5VZV1 264 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 SLC51AQ86UW1 340 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 ZDHHC13Q8IUH4 622 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 SETD9Q8NE22 299 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 PPP1R2P1Q96PQ5 205 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 COLEC11Q9BWP8 271 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 ABHD16BQ9H3Z7 469 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 NDFIP2Q9NV92 336 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 BTBD3Q9Y2F9 522 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 MAGEB16A2A368 324 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 H6PDO95479 791 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 ZNF286BP0CG31 522 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 VDRP11473 427 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CYP2F1P24903 491 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CRABP2P29373 138 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 ECHS1P30084 290 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 DLG1Q12959 904 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 IL31Q6EBC2 164 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 PTAR1Q7Z6K3 402 aaPredicted RBP11.42□□□□□ -0.58
TCOF1-211ENST00000513346 LUZP2Q86TE4 346 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 PDSS2Q86YH6 399 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 PDPRQ8NCN5 879 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 MTERF3Q96E29 417 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CDH19Q9H159 772 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 AAASQ9NRG9 546 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.42□□□□□ -0.58
TCOF1-211ENST00000513346 FETUBQ9UGM5 382 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CASZ1Q86V15 1759 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 RNF103O00237 685 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 BAIAP3O94812 1187 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 SNRPB2P08579 225 aaKnown RBP11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CYP3A4P08684 503 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 EIF4BP23588 611 aaKnown RBP11.42□□□□□ -0.58
TCOF1-211ENST00000513346 PRDX6P30041 224 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 HK2P52789 917 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 SP3Q02447 781 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.42□□□□□ -0.58
TCOF1-211ENST00000513346 LAMTOR4Q0VGL1 99 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 PTP4A2Q12974 167 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 ORC1Q13415 861 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 ADGRE1Q14246 886 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CEP78Q5JTW2 689 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 GALNT18Q6P9A2 607 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 ACOT1Q86TX2 421 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 PHF13Q86YI8 300 aaPredicted RBP11.42□□□□□ -0.58
TCOF1-211ENST00000513346 SLC22A9Q8IVM8 553 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 C10orf107Q8IVU9 208 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 PSMA8Q8TAA3 256 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 MCRS1Q96EZ8 462 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 TBCBQ99426 244 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CIB1Q99828 191 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 VANGL2Q9ULK5 521 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 TMED5Q9Y3A6 229 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 PCDHA11Q9Y5I1 949 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CYP3A7-CYP3A51PA0A087WV96 503 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 NPM3O75607 178 aaKnown RBP11.42□□□□□ -0.58
TCOF1-211ENST00000513346 CYP3A7P24462 503 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 ADORA2AP29274 412 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 EPHA3P29320 983 aa11.42□□□□□ -0.58
TCOF1-211ENST00000513346 ZC3H12BQ5HYM0 836 aaKnown RBP11.42□□□□□ -0.58
TCOF1-211ENST00000513346 RNASEH2BQ5TBB1 312 aaKnown RBP11.42□□□□□ -0.58
TCOF1-211ENST00000513346 RNF19BQ6ZMZ0 732 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms