RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PHC1P78364 1004 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 VPS26BQ4G0F5 336 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 HSD17B12Q53GQ0 312 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 PLEKHG4Q58EX7 1191 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 DDI2Q5TDH0 399 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 METTL21CQ5VZV1 264 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 USPL1Q5W0Q7 1092 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 DNAJB7Q7Z6W7 309 aaPredicted RBP11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 STK40Q8N2I9 435 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 POU5F2Q8N7G0 328 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 KCTD4Q8WVF5 259 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 TPD52L3Q96J77 140 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 TRMOQ9BU70 441 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 CYP4F12Q9HCS2 524 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 LRRC4BQ9NT99 713 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 CCDC167Q9P0B6 97 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 PRKAG3Q9UGI9 489 aa11.39□□□□□ -0.59
LIMCH1-217ENST00000512946 AFF2P51816 1311 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 A0A088AWK7 358 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 FAM172BPA6NC97 362 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 OPLAHO14841 1288 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 MLYCDO95822 493 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 ZNF10P21506 573 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 RENBPP51606 427 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 CCNHP51946 323 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 PITPNAQ00169 270 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 MYBPC3Q14896 1274 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 QRICH1Q2TAL8 776 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 DCAF6Q58WW2 860 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 PI16Q6UXB8 463 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 KDELC2Q7Z4H8 507 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 ATL1Q8WXF7 558 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 SEMA6AQ9H2E6 1030 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 MID1IP1Q9NPA3 183 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 SLC35C2Q9NQQ7 365 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 PRKAG2Q9UGJ0 569 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 USP17L15C9J2P7 530 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 USP17L13C9JLJ4 530 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 USP17L11C9JVI0 530 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 USP17L18D6R9N7 530 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 USP17L22D6RA61 530 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 USP17L17D6RBQ6 530 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 USP17L19D6RCP7 530 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 USP17L20D6RJB6 530 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 CASKO14936 926 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 PTX3P26022 381 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 UGT1A5P35504 534 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 HERVK_113P62684 666 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 USP17L24Q0WX57 530 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 E2F2Q14209 437 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 USP17L6PQ6QN14 398 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 SPESP1Q6UW49 350 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 MTSS1LQ765P7 747 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 ZDHHC17Q8IUH5 632 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 RBM12BQ8IXT5 1001 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 TAMM41Q96BW9 452 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 DYNLL2Q96FJ2 89 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 TRIT1Q9H3H1 467 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 CYP3A43Q9HB55 503 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 PP2D1A8MPX8 630 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 TFECO14948 347 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 KMOO15229 486 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 PMPCBO75439 489 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 GATBO75879 557 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 BMP7P18075 431 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 SLC11A2P49281 568 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 ERVK-9P63128 1117 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 CYP24A1Q07973 514 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 RHEBQ15382 184 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 CDKAL1Q5VV42 579 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 ARHGAP36Q6ZRI8 547 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 MILR1Q7Z6M3 343 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 TNFAIP8L1Q8WVP5 186 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 USP7Q93009 1102 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 S100A14Q9HCY8 104 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 CATSPERZQ9NTU4 200 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 SLC9A8Q9Y2E8 581 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 RAP2CQ9Y3L5 183 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 SEC22BO75396 215 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 ZNF7P17097 686 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 ARF4P18085 180 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 PTPN3P26045 913 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 GLRBP48167 497 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 MAPK10P53779 464 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 KCNJ2P63252 427 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 TMEM44Q2T9K0 475 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 MFSD7Q6UXD7 560 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 DENND5BQ6ZUT9 1274 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 ERI1Q8IV48 349 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 HTRA1Q92743 480 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 PANX3Q96QZ0 392 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 BCL2L14Q9BZR8 327 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 TRIM2Q9C040 744 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 NMRK2Q9NPI5 230 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 RASSF1Q9NS23 344 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 CUEDC1Q9NWM3 386 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 GGA3Q9NZ52 723 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 PMF1-BGLAPU3KQ54 211 aa11.38□□□□□ -0.59
LIMCH1-217ENST00000512946 ABCA5Q8WWZ7 1642 aa11.37□□□□□ -0.59
LIMCH1-217ENST00000512946 PRODHO43272 600 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms