RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 TNS4Q8IZW8 715 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ZNF669Q96BR6 464 aaPredicted RBP16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 AGAP3Q96P47 875 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 AGAP2Q99490 1192 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 FAM96AQ9H5X1 160 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CASS4Q9NQ75 786 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PCDHB12Q9Y5F1 795 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 NRCAMQ92823 1304 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 MAGEA13PA6NCF6 341 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 NRP1O14786 923 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 HUS1O60921 280 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 AP2A1O95782 977 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 BAG2O95816 211 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 IGFBP6P24592 240 aaPredicted RBP16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ACAT1P24752 427 aaKnown RBP16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CD68P34810 354 aaPredicted RBP16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ADRA1BP35368 520 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 RABGGTBP53611 331 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CCNIQ14094 377 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SV2CQ496J9 727 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 KIAA0319Q5VV43 1072 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CWF19L1Q69YN2 538 aaKnown RBP16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CLEC20AQ6ZU45 233 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 STRA8Q7Z7C7 330 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PHTF2Q8N3S3 785 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ARRDC4Q8NCT1 418 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ACTRT2Q8TDY3 377 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ATXN7L3BQ96GX2 97 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ECSITQ9BQ95 431 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SHCBP1LQ9BZQ2 653 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 WDR6Q9NNW5 1121 aaKnown RBP16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 KLHL8Q9P2G9 620 aaPredicted RBP16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SCOCQ9UIL1 159 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 STAP1Q9ULZ2 295 aa16.42■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ARHGAP42A6NI28 874 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CAPN15O75808 1086 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SMIM10L2AP0DMW4 78 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SMIM10L2BP0DMW5 78 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PTPN1P18031 435 aaKnown RBP16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SPRP35270 261 aaPredicted RBP16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SERPINB8P50452 374 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CDK7P50613 346 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CACNA2D1P54289 1103 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CDC42EP1Q00587 391 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 IRF9Q00978 393 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 USP4Q13107 963 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 FRG1Q14331 258 aaKnown RBP16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 DLG2Q15700 870 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 GSTA3Q16772 222 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ANKRD20A4Q4UJ75 823 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 RNF220Q5VTB9 566 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 EPGNQ6UW88 154 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ZNF781Q8N8C0 355 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 MCMBPQ9BTE3 642 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CAB39LQ9H9S4 337 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 VANGL2Q9ULK5 521 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PIN4Q9Y237 131 aaKnown RBP16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 TRIP12Q14669 1992 aaPredicted RBP16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SMIM35A0A1B0GVV1 85 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 MBLAC1A4D2B0 266 aaPredicted RBP16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ZBTB24O43167 697 aaPredicted RBP16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CYBAP13498 195 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ITGAXP20702 1163 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 GRK4P32298 578 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ABCG1P45844 678 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 DSG1Q02413 1049 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CDC16Q13042 620 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PCBP1Q15365 356 aaKnown RBP eCLIP16.41■□□□□ 0.228e-7■■■■□ 25
MSH5-SAPCD1-208ENST00000498473 RBM12BQ8IXT5 1001 aaKnown RBP16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 TOP6BLQ8N6T0 577 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 NPWQ8N729 165 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ACVR1CQ8NER5 493 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ADAM32Q8TC27 787 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 MAPK15Q8TD08 544 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 MLPHQ9BV36 600 aaPredicted RBP16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CDH19Q9H159 772 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 LRRC4Q9HBW1 653 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 NUP205Q92621 2012 aa16.41■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SHROOM3Q8TF72 1996 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ZBTB14O43829 449 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PDE5AO76074 875 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CYP2C9P11712 490 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 HOXD10P28358 340 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 AXLP30530 894 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 TKTL1P51854 596 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 ROR2Q01974 943 aaKnown RBP16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PPIDQ08752 370 aaKnown RBP16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PEX6Q13608 980 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SLC9B1Q4ZJI4 515 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 CERCAMQ5T4B2 595 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 FOXB2Q5VYV0 432 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 FRMD7Q6ZUT3 714 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 RAPH1Q70E73 1250 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 TLK2Q86UE8 772 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 SLC7A14Q8TBB6 771 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 PYDC1Q8WXC3 89 aa16.4■□□□□ 0.22
MSH5-SAPCD1-208ENST00000498473 EZH1Q92800 747 aaPredicted RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms