RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 FAM105AQ9NUU6 356 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 CLIC5Q9NZA1 410 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 NUDT5Q9UKK9 219 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 ASB3Q9Y575 518 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 SRGAP2BP0DMP2 458 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 ATP6V1B1P15313 513 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 NELFEP18615 380 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 PKNOX1P55347 436 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 ACTR3P61158 418 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 GK3PQ14409 553 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 RBBP5Q15291 538 aaKnown RBP16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 C4orf22Q6V702 233 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 FAM156AQ8NDB6 213 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 ACVR1CQ8NER5 493 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 SIK2Q9H0K1 926 aa16.87■□□□□ 0.29
CCDC88B-210ENST00000494566 CAPN8A6NHC0 703 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 RAG1P15918 1043 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 PGAM1P18669 254 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 BDNFP23560 247 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 TYK2P29597 1187 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 GLUD2P49448 558 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 GNASQ5JWF2 1037 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 WDR75Q8IWA0 830 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 GDPD5Q8WTR4 605 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 TUBB6Q9BUF5 446 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 TKTL2Q9H0I9 626 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 ARL5CA6NH57 179 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 AHCYL1O43865 530 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 LRPAP1P30533 357 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 CD68P34810 354 aaPredicted RBP16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 AVPR1AP37288 418 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 LBRQ14739 615 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 TIGD5Q53EQ6 642 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 SPDYAQ5MJ70 313 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 TEDDM1Q5T9Z0 273 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 STEAP4Q687X5 459 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 GDF6Q6KF10 455 aaPredicted RBP16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 SATL1Q86VE3 508 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 SOX13Q9UN79 622 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 INPP5FQ9Y2H2 1132 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 HNRNPCL1O60812 293 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 THP07101 528 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 FGF3P11487 239 aaPredicted RBP16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 HUNKP57058 714 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 PDPK2PQ6A1A2 396 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 ARHGAP36Q6ZRI8 547 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 MARK2Q7KZI7 788 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 BNIPLQ7Z465 357 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 SCAMP5Q8TAC9 235 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 PIWIL2Q8TC59 973 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 CDKL2Q92772 493 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 RNF34Q969K3 372 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 C7orf26Q96N11 449 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 PHF12Q96QT6 1004 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 AGO3Q9H9G7 860 aaKnown RBP16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 TXNDC16Q9P2K2 825 aa16.86■□□□□ 0.29
CCDC88B-210ENST00000494566 TSC2P49815 1807 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 STX16-NPEPL1H3BU86 382 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 KLF11O14901 512 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 ALDH1A2O94788 518 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 LTFP02788 710 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 GSTA2P09210 222 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 NFKB1P19838 968 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 SERPINB9P50453 376 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 PAFAH1B3Q15102 231 aaKnown RBP16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 HSP90AA5PQ58FG0 334 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 KDELC2Q7Z4H8 507 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 MYLK4Q86YV6 388 aaPredicted RBP16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 GALNT4Q8N4A0 578 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 ZNF781Q8N8C0 355 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 CERS2Q96G23 380 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 TMLHEQ9NVH6 421 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 PRKCGP05129 697 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 CPOXP36551 454 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 GRIA2P42262 883 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 PGFP49763 221 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 COPAP53621 1224 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 CCNIQ14094 377 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 PCBP1Q15365 356 aaKnown RBP eCLIP16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 CNPY1Q3B7I2 92 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 SLC9B1Q4ZJI4 515 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 CST9Q5W186 159 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 TMEM198Q66K66 360 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 NXNQ6DKJ4 435 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 RWDD4Q6NW29 188 aaKnown RBP16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 AGMOQ6ZNB7 445 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 NET1Q7Z628 596 aaPredicted RBP16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 MAPK15Q8TD08 544 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 KCTD13Q8WZ19 329 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 MYLPFQ96A32 169 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 COLEC11Q9BWP8 271 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 RRAGCQ9HB90 399 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 CHRAC1Q9NRG0 131 aa16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 RCOR3Q9P2K3 495 aaPredicted RBP16.85■□□□□ 0.29
CCDC88B-210ENST00000494566 SNNO75324 88 aaPredicted RBP16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 CHRNA1P02708 482 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 IDH3AP50213 366 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 MRPS6P82932 125 aaKnown RBP16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 PCLAFQ15004 111 aa16.84■□□□□ 0.29
CCDC88B-210ENST00000494566 MBLAC2Q68D91 279 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms