RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 PTPN9P43378 593 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 MCM2P49736 904 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 ID2Q02363 134 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 LMOD3Q0VAK6 560 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 BYSLQ13895 437 aaKnown RBP3.84□□□□□ -1.79
VPS41-207ENST00000439468 GPR162Q16538 588 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 LIPMQ5VYY2 423 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 DENND1BQ6P3S1 775 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 ZNF474Q6S9Z5 364 aaPredicted RBP3.84□□□□□ -1.79
VPS41-207ENST00000439468 SLC22A25Q6T423 547 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 RINLQ6ZS11 566 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 TCP11L2Q8N4U5 519 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 NRACQ8N912 160 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 USP38Q8NB14 1042 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 LSM14AQ8ND56 463 aaKnown RBP3.84□□□□□ -1.79
VPS41-207ENST00000439468 C16orf52Q8NHV5 167 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 KCNG4Q8TDN1 519 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 PIGKQ92643 395 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 KAT2AQ92830 837 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 ELP4Q96EB1 424 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 RNF125Q96EQ8 232 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 APOPT1Q96IL0 206 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP3.84□□□□□ -1.79
VPS41-207ENST00000439468 FRMD8Q9BZ67 464 aaPredicted RBP3.84□□□□□ -1.79
VPS41-207ENST00000439468 USP44Q9H0E7 712 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 TAOK3Q9H2K8 898 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 PREBQ9HCU5 417 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 TMEM248Q9NWD8 314 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 ZNF69Q9UC07 566 aa3.84□□□□□ -1.79
VPS41-207ENST00000439468 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP3.83□□□□□ -1.8
VPS41-207ENST00000439468 CXorf65A6NEN9 183 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 MYMKA6NI61 221 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 MCIDASD6RGH6 385 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 SPTLC2O15270 562 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 INPPL1O15357 1258 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 TSPAN3O60637 253 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 PLAUP00749 431 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 ITGB6P18564 788 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 TGM2P21980 687 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 ABCD3P28288 659 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 ELF1P32519 619 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 CPA2P48052 419 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 CASP6P55212 293 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 RPS13P62277 151 aaKnown RBP3.83□□□□□ -1.8
VPS41-207ENST00000439468 SEMA3AQ14563 771 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 IL13RA2Q14627 380 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 SLC9C1Q4G0N8 1177 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 GXYLT1Q4G148 440 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 FAM180BQ6P0A1 224 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 ZNF793Q6ZN11 406 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 RBM44Q6ZP01 1051 aaKnown RBP3.83□□□□□ -1.8
VPS41-207ENST00000439468 TECPR1Q7Z6L1 1165 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 ANKRD13BQ86YJ7 626 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 BRSK2Q8IWQ3 736 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 ENDOVQ8N8Q3 282 aaKnown RBP3.83□□□□□ -1.8
VPS41-207ENST00000439468 ZNF398Q8TD17 642 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 TBC1D22AQ8WUA7 517 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 IGFBPL1Q8WX77 278 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 P2RY11Q96G91 374 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 SIGLEC11Q96RL6 698 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 MPHOSPH8Q99549 860 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 TMEM79Q9BSE2 394 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 SCNM1Q9BWG6 230 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 LMAN2LQ9H0V9 348 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 FOXP1Q9H334 677 aaPredicted RBP3.83□□□□□ -1.8
VPS41-207ENST00000439468 SLC32A1Q9H598 525 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 Q9N2J8 555 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 TXNRD2Q9NNW7 524 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 CD207Q9UJ71 328 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 NAALADL1Q9UQQ1 740 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 CNPY2Q9Y2B0 182 aa3.83□□□□□ -1.8
VPS41-207ENST00000439468 SPATA31A5Q5VU36 1347 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 EMSYQ7Z589 1322 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 SPATA31A7Q8IWB4 1347 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 A0A0A0MQY5 61 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 TARSL2A2RTX5 802 aaKnown RBP3.82□□□□□ -1.8
VPS41-207ENST00000439468 IKBKBO14920 756 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 TBX18O95935 607 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 IFIT1P09914 478 aaKnown RBP3.82□□□□□ -1.8
VPS41-207ENST00000439468 TMEM191BP0C7N4 346 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 PRF1P14222 555 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 AKR1A1P14550 325 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 HOXB9P17482 250 aaPredicted RBP3.82□□□□□ -1.8
VPS41-207ENST00000439468 MTNR1AP48039 350 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 RPS6KA3P51812 740 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 GEMIN4P57678 1058 aaKnown RBP3.82□□□□□ -1.8
VPS41-207ENST00000439468 VAMP2P63027 116 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 RPP30P78346 268 aaKnown RBP3.82□□□□□ -1.8
VPS41-207ENST00000439468 RHAGQ02094 409 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 STIM1Q13586 685 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 FHL1Q13642 323 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 LAMB3Q13751 1172 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 NAA25Q14CX7 972 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 PGM5Q15124 567 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 GPATCH4Q5T3I0 446 aaKnown RBP3.82□□□□□ -1.8
VPS41-207ENST00000439468 C10orf25Q5T742 122 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 FAM69AQ5T7M9 428 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 AWAT2Q6E213 333 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 ACAD10Q6JQN1 1059 aa3.82□□□□□ -1.8
VPS41-207ENST00000439468 H1FNTQ75WM6 255 aaPredicted RBP3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms