RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 CDYL2Q8N8U2 506 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 NIF3L1Q9GZT8 377 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 FBXO40Q9UH90 709 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 GRIA3P42263 894 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 SIRT2Q8IXJ6 389 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 ABI1Q8IZP0 508 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 CAMKK1Q8N5S9 505 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 OR2T34Q8NGX1 318 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 OR2T3Q8NH03 318 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 TOR4AQ9NXH8 423 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 SCN8AQ9UQD0 1980 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 NOS3P29474 1203 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 IL18R1Q13478 541 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 NFE2L1Q14494 772 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 OR6B3Q8NGW1 331 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 KBTBD7Q8WVZ9 684 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 DDX17Q92841 729 aaKnown RBP12.78□□□□□ -0.36
COL6A3-203ENST00000353578 NXNL1Q96CM4 212 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 CKLFQ9UBR5 152 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 ABL1P00519 1130 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 GSTM1P09488 218 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 GRK4P32298 578 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 SLC5A3P53794 718 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 ERVK-9P63128 1117 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 ZNF45Q02386 682 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 TMPRSS11AQ6ZMR5 421 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 CHMP1BQ7LBR1 199 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 AP1S3Q96PC3 154 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 TEFMQ96QE5 360 aaKnown RBP12.78□□□□□ -0.36
COL6A3-203ENST00000353578 TRIM2Q9C040 744 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 MAGED2Q9UNF1 606 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-203ENST00000353578 SH3PXD2BA1X283 911 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 FAM43BQ6ZT52 329 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-203ENST00000353578 ARL5BQ96KC2 179 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 KCNIP3Q9Y2W7 256 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 BTDP43251 543 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 CDK18Q07002 472 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 MTMR1Q13613 665 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 OLFML2AQ68BL7 652 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 TMEM179Q6ZVK1 233 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 PGAM4Q8N0Y7 254 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 MRPL57Q9BQC6 102 aaKnown RBP12.78□□□□□ -0.36
COL6A3-203ENST00000353578 PPP2R3BQ9Y5P8 575 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 LOXHD1Q8IVV2 1947 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 CRTAMO95727 393 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 MLYCDO95822 493 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 PRR5LQ6MZQ0 368 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 ETFBP38117 255 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 ALDH3A2P51648 485 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 ALDH6A1Q02252 535 aaKnown RBP12.78□□□□□ -0.36
COL6A3-203ENST00000353578 PSMD5Q16401 504 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 CIAPIN1Q6FI81 312 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 KATNAL2Q8IYT4 538 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 RASGRP4Q8TDF6 673 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 DNAJC28Q9NX36 388 aa12.78□□□□□ -0.36
COL6A3-203ENST00000353578 EVPLQ92817 2033 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 ETS2P15036 469 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 COBLL1Q53SF7 1204 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 PTRHD1Q6GMV3 140 aaKnown RBP12.77□□□□□ -0.36
COL6A3-203ENST00000353578 ZDHHC17Q8IUH5 632 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 SEPHS2Q99611 448 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 PET100P0DJ07 73 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 CCNB1P14635 433 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 LBPP18428 481 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 ZNF517Q6ZMY9 492 aaPredicted RBP12.77□□□□□ -0.36
COL6A3-203ENST00000353578 UXS1Q8NBZ7 420 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 RFKQ969G6 155 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 SLC39A8Q9C0K1 460 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 ACSS3Q9H6R3 686 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 PI4KBQ9UBF8 816 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 SLC30A1Q9Y6M5 507 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 FOXO3O43524 673 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 RNASEH1O60930 286 aaKnown RBP12.77□□□□□ -0.36
COL6A3-203ENST00000353578 CHRM1P11229 460 aaPredicted RBP12.77□□□□□ -0.36
COL6A3-203ENST00000353578 GUCY1A2P33402 732 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 PABPC1LQ4VXU2 614 aaKnown RBP12.77□□□□□ -0.36
COL6A3-203ENST00000353578 GRHL2Q6ISB3 625 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 LPCAT1Q8NF37 534 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 TNFAIP8L1Q8WVP5 186 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 PUS7LQ9H0K6 701 aaKnown RBP12.77□□□□□ -0.36
COL6A3-203ENST00000353578 TMEM168Q9H0V1 697 aa12.77□□□□□ -0.36
COL6A3-203ENST00000353578 NPM3O75607 178 aaKnown RBP12.77□□□□□ -0.37
COL6A3-203ENST00000353578 FCER1AP12319 257 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 NFKB1P19838 968 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 SOAT1P35610 550 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 RBP5P82980 135 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 PRKG1Q13976 671 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 LRRC38Q5VT99 294 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 ESRP1Q6NXG1 681 aaKnown RBP12.77□□□□□ -0.37
COL6A3-203ENST00000353578 MOXD1Q6UVY6 613 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 AGAP1Q9UPQ3 857 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 LRRC42Q9Y546 428 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 PCDHA3Q9Y5H8 950 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 HDAC3O15379 428 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 ATP9BO43861 1147 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 PABPC4LP0CB38 370 aaKnown RBP12.77□□□□□ -0.37
COL6A3-203ENST00000353578 CCR3P51677 355 aa12.77□□□□□ -0.37
COL6A3-203ENST00000353578 RFTN2Q52LD8 501 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-203ENST00000353578 C9orf43Q8TAL5 461 aaPredicted RBP12.77□□□□□ -0.37
COL6A3-203ENST00000353578 ZNF512BQ96KM6 892 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms