RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ZNF33AQ06730 810 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 MAMLD1Q13495 774 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 ACBD5Q5T8D3 534 aaPredicted RBP15.45■□□□□ 0.06
VPS39-210ENST00000568357 FAM72AQ5TYM5 149 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 HGSNATQ68CP4 663 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 FAM72DQ6L9T8 149 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 TFAP2DQ7Z6R9 452 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 FAM72BQ86X60 149 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 PTPRN2Q92932 1015 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 ZNF419Q96HQ0 510 aaPredicted RBP15.45■□□□□ 0.06
VPS39-210ENST00000568357 XPO4Q9C0E2 1151 aaKnown RBP15.45■□□□□ 0.06
VPS39-210ENST00000568357 TSPY26PQ9H489 355 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 ZNF212Q9UDV6 495 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 OR12D3Q9UGF7 316 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 ZMIZ1Q9ULJ6 1067 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 CAPN11Q9UMQ6 739 aa15.45■□□□□ 0.06
VPS39-210ENST00000568357 CNOT1A5YKK6 2376 aaKnown RBP15.44■□□□□ 0.06
VPS39-210ENST00000568357 ZFYVE26Q68DK2 2539 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 A0A0D9SEW6 157 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 CCP110O43303 1012 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 ATMINO43313 823 aaPredicted RBP15.44■□□□□ 0.06
VPS39-210ENST00000568357 NDUFS2O75306 463 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 ACADMP11310 421 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 VAV1P15498 845 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 SULT2A1Q06520 285 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 ARL13BQ3SXY8 428 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 LYSMD4Q5XG99 296 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 IL31Q6EBC2 164 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 PLEKHA7Q6IQ23 1121 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 LRSAM1Q6UWE0 723 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 FAM124AQ86V42 546 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 SYT12Q8IV01 421 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 C12orf50Q8NA57 414 aaPredicted RBP15.44■□□□□ 0.06
VPS39-210ENST00000568357 SYN2Q92777 582 aaPredicted RBP15.44■□□□□ 0.06
VPS39-210ENST00000568357 PPP1R9BQ96SB3 815 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 FAM129BQ96TA1 746 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 PSMB7Q99436 277 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 GPR174Q9BXC1 333 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 ZYG11BQ9C0D3 744 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 MUC3BQ9H195 1237 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 OSBPL2Q9H1P3 480 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 RSPH9Q9H1X1 276 aaPredicted RBP15.44■□□□□ 0.06
VPS39-210ENST00000568357 VPS28Q9UK41 221 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 PILRBQ9UKJ0 227 aa15.44■□□□□ 0.06
VPS39-210ENST00000568357 MUC22E2RYF6 1773 aaPredicted RBP15.44■□□□□ 0.06
VPS39-210ENST00000568357 ITIH6Q6UXX5 1313 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 ATXN2Q99700 1313 aaKnown RBP15.43■□□□□ 0.06
VPS39-210ENST00000568357 PKD1L2Q7Z442 2459 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 FASNP49327 2511 aaKnown RBP15.43■□□□□ 0.06
VPS39-210ENST00000568357 EDDM13A0A1B0GTR0 161 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 TARSL2A2RTX5 802 aaKnown RBP15.43■□□□□ 0.06
VPS39-210ENST00000568357 FOXD2O60548 495 aaPredicted RBP15.43■□□□□ 0.06
VPS39-210ENST00000568357 RTN2O75298 545 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 MT-CO1P00395 513 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 GYPCP04921 128 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 RHOCP08134 193 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 PLEKP08567 350 aaPredicted RBP15.43■□□□□ 0.06
VPS39-210ENST00000568357 OXTRP30559 389 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 OR1E1P30953 314 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 IRX4P78413 519 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 ZBED6P86452 979 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 NRG1Q02297 640 aaPredicted RBP15.43■□□□□ 0.06
VPS39-210ENST00000568357 AASDHQ4L235 1098 aaPredicted RBP15.43■□□□□ 0.06
VPS39-210ENST00000568357 MANEALQ5VSG8 457 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 PPP1R2P3Q6NXS1 205 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 DCUN1D2Q6PH85 259 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 SETD3Q86TU7 594 aaPredicted RBP15.43■□□□□ 0.06
VPS39-210ENST00000568357 RNF214Q8ND24 703 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 FRS2Q8WU20 508 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 HSPA12BQ96MM6 686 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 CNPY3Q9BT09 278 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 FBRSQ9HAH7 460 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 PARVAQ9NVD7 372 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 PPARGC1AQ9UBK2 798 aaKnown RBP15.43■□□□□ 0.06
VPS39-210ENST00000568357 ADAMTS1Q9UHI8 967 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 CEP295Q9C0D2 2601 aa15.43■□□□□ 0.06
VPS39-210ENST00000568357 ANKRD62A6NC57 917 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 KHNYNO15037 678 aaKnown RBP15.42■□□□□ 0.06
VPS39-210ENST00000568357 ZZEF1O43149 2961 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 SNAP91O60641 907 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 LRIG2O94898 1065 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 MAOBP27338 520 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 CASP14P31944 242 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 ACSL1P33121 698 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 VASPP50552 380 aaPredicted RBP15.42■□□□□ 0.06
VPS39-210ENST00000568357 ZBTB16Q05516 673 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 C6orf118Q5T5N4 469 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 PEAR1Q5VY43 1037 aaPredicted RBP15.42■□□□□ 0.06
VPS39-210ENST00000568357 ZNF776Q68DI1 518 aaPredicted RBP15.42■□□□□ 0.06
VPS39-210ENST00000568357 SCYL2Q6P3W7 929 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 UNQ6494/PRO21346Q6UXR6 183 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 SLFN11Q7Z7L1 901 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 MMAAQ8IVH4 418 aaKnown RBP15.42■□□□□ 0.06
VPS39-210ENST00000568357 PYROXD2Q8N2H3 581 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 STK40Q8N2I9 435 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 OR7D4Q8NG98 312 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 NTAN1Q96AB6 310 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 TRIM7Q9C029 511 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 ISCUQ9H1K1 167 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 NDFIP2Q9NV92 336 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms