RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 EPHX1P07099 455 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 RARAP10276 462 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 C7P10643 843 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 PRKCHP24723 683 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 ARL4AP40617 200 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 NBL1P41271 181 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 CLCN6P51797 869 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 VAV2P52735 878 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 GEMIN4P57678 1058 aaKnown RBP13.33□□□□□ -0.28
NEDD8-208ENST00000560427 CAMK2GQ13555 558 aaPredicted RBP13.33□□□□□ -0.28
NEDD8-208ENST00000560427 CA9Q16790 459 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 PARP15Q460N3 678 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 RETSATQ6NUM9 610 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 C11orf63Q6NUN7 778 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 C11orf74Q86VG3 221 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 UMODL1-AS1Q8N2C9 162 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 OR52K2Q8NGK3 314 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 ANP32BQ92688 251 aaKnown RBP13.33□□□□□ -0.28
NEDD8-208ENST00000560427 ATOH1Q92858 354 aaPredicted RBP13.33□□□□□ -0.28
NEDD8-208ENST00000560427 MYO19Q96H55 970 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 KCTD15Q96SI1 283 aaPredicted RBP13.33□□□□□ -0.28
NEDD8-208ENST00000560427 ZDHHC4Q9NPG8 344 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 HS3ST2Q9Y278 367 aa13.33□□□□□ -0.28
NEDD8-208ENST00000560427 CACNA1IQ9P0X4 2223 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 A0A0D9SEW6 157 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 TARSL2A2RTX5 802 aaKnown RBP13.32□□□□□ -0.28
NEDD8-208ENST00000560427 PJA2O43164 708 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 ARHGAP6O43182 974 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 DAPK3O43293 454 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 WASP42768 502 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 SSR1P43307 286 aaKnown RBP13.32□□□□□ -0.28
NEDD8-208ENST00000560427 NOP2P46087 812 aaKnown RBP13.32□□□□□ -0.28
NEDD8-208ENST00000560427 NDST2P52849 883 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 NHLH1Q02575 133 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 SLC20A2Q08357 652 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 BYSLQ13895 437 aaKnown RBP13.32□□□□□ -0.28
NEDD8-208ENST00000560427 MESDQ14696 234 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 PDK2Q15119 407 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 SMTNL2Q2TAL5 461 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 HNRNPA1L2Q32P51 320 aaKnown RBP13.32□□□□□ -0.28
NEDD8-208ENST00000560427 PPP6R3Q5H9R7 873 aaPredicted RBP13.32□□□□□ -0.28
NEDD8-208ENST00000560427 KCNT1Q5JUK3 1230 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 LRRC38Q5VT99 294 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 DAB2IPQ5VWQ8 1189 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 ANO7Q6IWH7 933 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 METTL3Q86U44 580 aaKnown RBP13.32□□□□□ -0.28
NEDD8-208ENST00000560427 VSIG1Q86XK7 387 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 MAP7D3Q8IWC1 876 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 LZTR1Q8N653 840 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 MDGA1Q8NFP4 955 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 FAM71BQ8TC56 605 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 ARHGEF2Q92974 986 aaKnown RBP13.32□□□□□ -0.28
NEDD8-208ENST00000560427 PSMB7Q99436 277 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 ACE2Q9BYF1 805 aaPredicted RBP13.32□□□□□ -0.28
NEDD8-208ENST00000560427 ATP13A1Q9HD20 1204 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 GPATCH2LQ9NWQ4 482 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 BCCIPQ9P287 314 aaKnown RBP eCLIP13.32□□□□□ -0.28
NEDD8-208ENST00000560427 DNAI1Q9UI46 699 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 VPS51Q9UID3 782 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 DOCK4Q8N1I0 1966 aa13.32□□□□□ -0.28
NEDD8-208ENST00000560427 EDDM13A0A1B0GTR0 161 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 ZSCAN5CA6NGD5 496 aaPredicted RBP13.31□□□□□ -0.28
NEDD8-208ENST00000560427 ZNF487B1APH4 448 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 PROB1E7EW31 1015 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 ATP9BO43861 1147 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 ZNF217O75362 1048 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 TCF4P15884 667 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 GOT1P17174 413 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 GABRG2P18507 467 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 SERPINB6P35237 376 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 CTSOP43234 321 aaPredicted RBP13.31□□□□□ -0.28
NEDD8-208ENST00000560427 FNTBP49356 437 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 ZBTB16Q05516 673 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 DPYSQ14117 519 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 KRT81Q14533 505 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 POLD3Q15054 466 aaPredicted RBP13.31□□□□□ -0.28
NEDD8-208ENST00000560427 IL31Q6EBC2 164 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 KIAA1211LQ6NV74 962 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 KIAA1328Q86T90 577 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 OR2T3Q8NH03 318 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 HMGB4Q8WW32 186 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 CASKIN2Q8WXE0 1202 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 TSC1Q92574 1164 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 HSPH1Q92598 858 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 ZNF670Q9BS34 389 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 MAGEB5Q9BZ81 275 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 CEP44Q9C0F1 390 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 PCDH18Q9HCL0 1135 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 NDFIP2Q9NV92 336 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 POLR3BQ9NW08 1133 aaPredicted RBP13.31□□□□□ -0.28
NEDD8-208ENST00000560427 CWC15Q9P013 229 aaKnown RBP13.31□□□□□ -0.28
NEDD8-208ENST00000560427 HPCAL4Q9UM19 191 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 REXO2Q9Y3B8 237 aaKnown RBP13.31□□□□□ -0.28
NEDD8-208ENST00000560427 RAD54BQ9Y620 910 aa13.31□□□□□ -0.28
NEDD8-208ENST00000560427 TMEM110-MUSTN1A8MSY1 372 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 WASH3PC4AMC7 463 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 CBX4O00257 560 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 ALOX15BO15296 676 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 PSTPIP1O43586 416 aa13.3□□□□□ -0.28
NEDD8-208ENST00000560427 ZMPSTE24O75844 475 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms