RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 SRFBP1Q8NEF9 429 aaKnown RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 TNIP2Q8NFZ5 429 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 ACTRT2Q8TDY3 377 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 SH3RF3Q8TEJ3 882 aaPredicted RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 NSUN4Q96CB9 384 aaKnown RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 BBC3Q96PG8 261 aaPredicted RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 NUDT16L1Q9BRJ7 211 aaKnown RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 ZNF747Q9BV97 191 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 TRIM31Q9BZY9 425 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 RANBP17Q9H2T7 1088 aaKnown RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 VEZTQ9HBM0 779 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 PCDHB16Q9NRJ7 776 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 ANKEF1Q9NU02 776 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 ASNSD1Q9NWL6 643 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 KCND2Q9NZV8 630 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 FOXJ2Q9P0K8 574 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 HSPB7Q9UBY9 170 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 VPS28Q9UK41 221 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 OSGIN2Q9Y236 505 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 EPN1Q9Y6I3 576 aaPredicted RBP3.24□□□□□ -1.89
CD44-234ENST00000531873 COL4A3Q01955 1670 aa3.24□□□□□ -1.89
CD44-234ENST00000531873 TCRBV5S1A1TA0A578 114 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 MCIDASD6RGH6 385 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 CLIC1O00299 241 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 QSOX1O00391 747 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 DSCR3O14972 297 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 HKR1P10072 659 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 CYP2D6P10635 497 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 PKMP14618 531 aaKnown RBP3.23□□□□□ -1.89
CD44-234ENST00000531873 ALOX12P18054 663 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 RRM1P23921 792 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 ABCD1P33897 745 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 IDUAP35475 653 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 ACTN2P35609 894 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 BSGP35613 385 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 HADHAP40939 763 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 PTPN9P43378 593 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 ADPRHP54922 357 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 UFM1P61960 85 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 EFNB1P98172 346 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 ZBTB16Q05516 673 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 GOLGA8FQ08AF8 430 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 SLC14A1Q13336 389 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 MPP3Q13368 585 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 KCNB1Q14721 858 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 CCNG2Q16589 344 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 TBC1D25Q3MII6 688 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 FBXO43Q4G163 708 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 SLC9B1Q4ZJI4 515 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 MIIPQ5JXC2 388 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 ZNF280DQ6N043 979 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 SLC30A9Q6PML9 568 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 ZNF474Q6S9Z5 364 aaPredicted RBP3.23□□□□□ -1.89
CD44-234ENST00000531873 C17orf99Q6UX52 265 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 NAPRTQ6XQN6 538 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 CCDC129Q6ZRS4 1044 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 TFAP2DQ7Z6R9 452 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 ZNF575Q86XF7 245 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 RFX6Q8HWS3 928 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 LSMEM1Q8N8F7 131 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 TERB1Q8NA31 727 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 FAM110DQ8TAY7 271 aaPredicted RBP3.23□□□□□ -1.89
CD44-234ENST00000531873 ETNPPLQ8TBG4 499 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 NCSTNQ92542 709 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 TBC1D5Q92609 795 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 REPS1Q96D71 796 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 PDLIM2Q96JY6 352 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 COQ10AQ96MF6 247 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 TIGD1Q96MW7 591 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 ZNF347Q96SE7 839 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 PIP5K1AQ99755 562 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 NPLQ9BXD5 320 aaPredicted RBP3.23□□□□□ -1.89
CD44-234ENST00000531873 ADGRE3Q9BY15 652 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 FRMD8Q9BZ67 464 aaPredicted RBP3.23□□□□□ -1.89
CD44-234ENST00000531873 TTC12Q9H892 705 aaPredicted RBP3.23□□□□□ -1.89
CD44-234ENST00000531873 SFXN1Q9H9B4 322 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 TXNRD2Q9NNW7 524 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 PLSCR4Q9NRQ2 329 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 SEPT11Q9NVA2 429 aaKnown RBP3.23□□□□□ -1.89
CD44-234ENST00000531873 HAUS2Q9NVX0 235 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 TMEM248Q9NWD8 314 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 ST3GAL5Q9UNP4 418 aa3.23□□□□□ -1.89
CD44-234ENST00000531873 SIRT4Q9Y6E7 314 aaPredicted RBP3.23□□□□□ -1.89
CD44-234ENST00000531873 RSF1Q96T23 1441 aaPredicted RBP3.22□□□□□ -1.89
CD44-234ENST00000531873 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.22□□□□□ -1.89
CD44-234ENST00000531873 CCDC151A5D8V7 595 aa3.22□□□□□ -1.89
CD44-234ENST00000531873 PABPN1LA6NDY0 278 aaKnown RBP3.22□□□□□ -1.89
CD44-234ENST00000531873 TMEM232C9JQI7 657 aa3.22□□□□□ -1.89
CD44-234ENST00000531873 IFNL4K9M1U5 179 aa3.22□□□□□ -1.89
CD44-234ENST00000531873 RRHO14718 337 aa3.22□□□□□ -1.89
CD44-234ENST00000531873 TIPRLO75663 272 aa3.22□□□□□ -1.89
CD44-234ENST00000531873 PGM3O95394 542 aa3.22□□□□□ -1.89
CD44-234ENST00000531873 ESRRBO95718 433 aa3.22□□□□□ -1.89
CD44-234ENST00000531873 MT-CO3P00414 261 aa3.22□□□□□ -1.89
CD44-234ENST00000531873 ADAP00813 363 aa3.22□□□□□ -1.89
CD44-234ENST00000531873 CHRM4P08173 479 aa3.22□□□□□ -1.89
CD44-234ENST00000531873 SLC3A2P08195 630 aaKnown RBP3.22□□□□□ -1.89
CD44-234ENST00000531873 HSPA1AP0DMV8 641 aaKnown RBP3.22□□□□□ -1.89
CD44-234ENST00000531873 HSPA1BP0DMV9 641 aaKnown RBP3.22□□□□□ -1.89
CD44-234ENST00000531873 AKR1B1P15121 316 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms