RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CCDC33Q8N5R6 958 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 TTC13Q8NBP0 860 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 ACTRT1Q8TDG2 376 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 MAIP1Q8WWC4 291 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 P3H4Q92791 437 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 ARHGEF2Q92974 986 aaKnown RBP12.54□□□□□ -0.4
SDC1-206ENST00000482879 CHFRQ96EP1 664 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 HMCESQ96FZ2 354 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 LMLNQ96KR4 655 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 PNKPQ96T60 521 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 NAP1L3Q99457 506 aaPredicted RBP12.54□□□□□ -0.4
SDC1-206ENST00000482879 FEM1AQ9BSK4 669 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 LRRC19Q9H756 370 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 DTLQ9NZJ0 730 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 SAE1Q9UBE0 346 aaPredicted RBP12.54□□□□□ -0.4
SDC1-206ENST00000482879 GGA2Q9UJY4 613 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 VPS28Q9UK41 221 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 TTC7AQ9ULT0 858 aaPredicted RBP12.54□□□□□ -0.4
SDC1-206ENST00000482879 SLC27A6Q9Y2P4 619 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 UNC80Q8N2C7 3258 aa12.54□□□□□ -0.4
SDC1-206ENST00000482879 APOC4-APOC2K7ER74 178 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 PGRMC1O00264 195 aaKnown RBP12.53□□□□□ -0.4
SDC1-206ENST00000482879 APOC2P02655 101 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 APODP05090 189 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 PECAM1P16284 738 aaPredicted RBP12.53□□□□□ -0.4
SDC1-206ENST00000482879 MX2P20592 715 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 PAFAH1B1P43034 410 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 PAPOLAP51003 745 aaKnown RBP12.53□□□□□ -0.4
SDC1-206ENST00000482879 PLK1P53350 603 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 OTUD4Q01804 1114 aaKnown RBP12.53□□□□□ -0.4
SDC1-206ENST00000482879 KLF1Q13351 362 aaPredicted RBP12.53□□□□□ -0.4
SDC1-206ENST00000482879 DMC1Q14565 340 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 GEN1Q17RS7 908 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 PLEKHG6Q3KR16 790 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 PARP15Q460N3 678 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 PITRM1Q5JRX3 1037 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 DNTTIP2Q5QJE6 756 aaKnown RBP12.53□□□□□ -0.4
SDC1-206ENST00000482879 KIAA0907Q7Z7F0 614 aaPredicted RBP12.53□□□□□ -0.4
SDC1-206ENST00000482879 CREG2Q8IUH2 290 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 UBALD2Q8IYN6 164 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.53□□□□□ -0.4
SDC1-206ENST00000482879 ACTL9Q8TC94 416 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 WFIKKN2Q8TEU8 576 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 EXOC4Q96A65 974 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 ALG14Q96F25 216 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 P2RY13Q9BPV8 354 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 ATP13A1Q9HD20 1204 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 SMARCAL1Q9NZC9 954 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 RNF14Q9UBS8 474 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 MUTYHQ9UIF7 546 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 FBXL21Q9UKT6 434 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 INTS6Q9UL03 887 aaKnown RBP12.53□□□□□ -0.4
SDC1-206ENST00000482879 CA14Q9ULX7 337 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 HPCAL4Q9UM19 191 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 OR51B4Q9Y5P0 310 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 RAD54BQ9Y620 910 aa12.53□□□□□ -0.4
SDC1-206ENST00000482879 TBC1D3BA6NDS4 549 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 NCAM2O15394 837 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 KAT7O95251 611 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 POLR2EP19388 210 aaKnown RBP12.52□□□□□ -0.41
SDC1-206ENST00000482879 GRIA2P42262 883 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 MESP2Q0VG99 397 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 GALNT2Q10471 571 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 SERINC3Q13530 473 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 PDK1Q15118 436 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 NOMO1Q15155 1222 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 PON2Q15165 354 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 MLF2Q15773 248 aaPredicted RBP12.52□□□□□ -0.41
SDC1-206ENST00000482879 FUT11Q495W5 492 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 MBLAC2Q68D91 279 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 TXNDC11Q6PKC3 985 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 TPRG1Q6ZUI0 275 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 NUDT18Q6ZVK8 323 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 LRRC49Q8IUZ0 686 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 SUGP1Q8IWZ8 645 aaKnown RBP12.52□□□□□ -0.41
SDC1-206ENST00000482879 AHI1Q8N157 1196 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 PHTF2Q8N3S3 785 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 ATPAF2Q8N5M1 289 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 TERB1Q8NA31 727 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 CCNYQ8ND76 341 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 C1orf54Q8WWF1 131 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 MSANTD3Q96H12 275 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 FAM118BQ9BPY3 351 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 ACE2Q9BYF1 805 aaPredicted RBP12.52□□□□□ -0.41
SDC1-206ENST00000482879 FBRSL1Q9HCM7 1045 aaKnown RBP12.52□□□□□ -0.41
SDC1-206ENST00000482879 WNT16Q9UBV4 365 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 IPO11Q9UI26 975 aaKnown RBP12.52□□□□□ -0.41
SDC1-206ENST00000482879 CDC23Q9UJX2 597 aa12.52□□□□□ -0.41
SDC1-206ENST00000482879 R3HDM2Q9Y2K5 976 aaKnown RBP12.52□□□□□ -0.41
SDC1-206ENST00000482879 PRRT4C9JH25 899 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 H7C0C1 242 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 CBX4O00257 560 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 KRIT1O00522 736 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 MAN2B1O00754 1011 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 PPP1R12AO14974 1030 aaPredicted RBP12.51□□□□□ -0.41
SDC1-206ENST00000482879 MCF2LO15068 1137 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 TIMM44O43615 452 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 KDELR3O43731 214 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 SNAP91O60641 907 aa12.51□□□□□ -0.41
SDC1-206ENST00000482879 GLDCP23378 1020 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms