RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 ZNF211Q13398 564 aaPredicted RBP16.62■□□□□ 0.25
CUX2-202ENST00000397643 MORC3Q14149 939 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 TBC1D3GQ6DHY5 549 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 ISM2Q6H9L7 571 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 TBC1D3CQ6IPX1 549 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 SASS6Q6UVJ0 657 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.62■□□□□ 0.25
CUX2-202ENST00000397643 KDM7AQ6ZMT4 941 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 TRIM69Q86WT6 500 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 SMYD4Q8IYR2 804 aaPredicted RBP16.62■□□□□ 0.25
CUX2-202ENST00000397643 TBC1D3Q8IZP1 549 aaPredicted RBP16.62■□□□□ 0.25
CUX2-202ENST00000397643 SERPINB11Q96P15 392 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 SARDHQ9UL12 918 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 DMTF1Q9Y222 760 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 CA5BQ9Y2D0 317 aa16.62■□□□□ 0.25
CUX2-202ENST00000397643 HECTD1Q9ULT8 2610 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 J3QKU1 62 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 SLC7A4O43246 635 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 MOCS3O95396 460 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 CALCAP01258 141 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 PAEPP09466 180 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 GIMD1P0DJR0 217 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 NUMBP49757 651 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 YWHAEP62258 255 aaKnown RBP16.61■□□□□ 0.25
CUX2-202ENST00000397643 DCAF17Q5H9S7 520 aaPredicted RBP16.61■□□□□ 0.25
CUX2-202ENST00000397643 AGBL4Q5VU57 503 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 CDCP2Q5VXM1 449 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 PRPF39Q86UA1 669 aaKnown RBP16.61■□□□□ 0.25
CUX2-202ENST00000397643 TAC4Q86UU9 113 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 ZNF248Q8NDW4 579 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 SPAG5Q96R06 1193 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 LGMNQ99538 433 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 KDM4CQ9H3R0 1056 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 CAAP1Q9H8G2 361 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 NAALADL1Q9UQQ1 740 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 CEP83Q9Y592 693 aa16.61■□□□□ 0.25
CUX2-202ENST00000397643 M0QYV0 167 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 RNF225M0QZC1 329 aaPredicted RBP16.6■□□□□ 0.25
CUX2-202ENST00000397643 CETN3O15182 167 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 FBXO21O94952 628 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 MOCS2O96007 188 aaPredicted RBP16.6■□□□□ 0.25
CUX2-202ENST00000397643 NUDT1P36639 197 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 PPP1R2P41236 205 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 RPL34P49207 117 aaKnown RBP16.6■□□□□ 0.25
CUX2-202ENST00000397643 PCBP4P57723 403 aaKnown RBP16.6■□□□□ 0.25
CUX2-202ENST00000397643 E2F1Q01094 437 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 LRMPQ12912 555 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 STIM1Q13586 685 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 CNGA2Q16280 664 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 TCERG1LQ5VWI1 586 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 RNF219Q5W0B1 726 aaPredicted RBP16.6■□□□□ 0.25
CUX2-202ENST00000397643 RAP1GAP2Q684P5 730 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 TMEM270Q6UE05 265 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 LGI2Q8N0V4 545 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 TMEM145Q8NBT3 493 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 OR4C6Q8NH72 309 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 SLC35C1Q96A29 364 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 HSFY1Q96LI6 401 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 SEMA4CQ9C0C4 833 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 UCKL1Q9NWZ5 548 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 SPTA1P02549 2419 aa16.6■□□□□ 0.25
CUX2-202ENST00000397643 COL27A1Q8IZC6 1860 aaPredicted RBP16.59■□□□□ 0.25
CUX2-202ENST00000397643 SLC16A3O15427 465 aaKnown RBP16.59■□□□□ 0.25
CUX2-202ENST00000397643 MAGEC1O60732 1142 aa16.59■□□□□ 0.25
CUX2-202ENST00000397643 DXOO77932 396 aaKnown RBP16.59■□□□□ 0.25
CUX2-202ENST00000397643 MPOP05164 745 aa16.59■□□□□ 0.25
CUX2-202ENST00000397643 TACR2P21452 398 aa16.59■□□□□ 0.25
CUX2-202ENST00000397643 DGKAP23743 735 aa16.59■□□□□ 0.25
CUX2-202ENST00000397643 TBXAS1P24557 533 aaPredicted RBP16.59■□□□□ 0.25
CUX2-202ENST00000397643 BRD2P25440 801 aaKnown RBP16.59■□□□□ 0.25
CUX2-202ENST00000397643 TAS2R38P59533 333 aa16.59■□□□□ 0.25
CUX2-202ENST00000397643 CNTN1Q12860 1018 aa16.59■□□□□ 0.25
CUX2-202ENST00000397643 COBLL1Q53SF7 1204 aa16.59■□□□□ 0.25
CUX2-202ENST00000397643 SYPL2Q5VXT5 272 aa16.59■□□□□ 0.25
CUX2-202ENST00000397643 CIR1Q86X95 450 aaPredicted RBP16.59■□□□□ 0.25
CUX2-202ENST00000397643 CCDC117Q8IWD4 279 aaPredicted RBP16.59■□□□□ 0.25
CUX2-202ENST00000397643 MLKLQ8NB16 471 aa16.59■□□□□ 0.25
CUX2-202ENST00000397643 KAT5Q92993 513 aa16.59■□□□□ 0.25
CUX2-202ENST00000397643 WBP1Q96G27 269 aa16.59■□□□□ 0.25
CUX2-202ENST00000397643 NAF1Q96HR8 494 aaKnown RBP16.59■□□□□ 0.25
CUX2-202ENST00000397643 ZNF578Q96N58 590 aaPredicted RBP16.59■□□□□ 0.25
CUX2-202ENST00000397643 MIS12Q9H081 205 aa16.59■□□□□ 0.25
CUX2-202ENST00000397643 CPNE5Q9HCH3 593 aa16.59■□□□□ 0.25
CUX2-202ENST00000397643 LY6G6EA0A0G2JKS1 128 aa16.58■□□□□ 0.24
CUX2-202ENST00000397643 A0A1B0GVM2 712 aa16.58■□□□□ 0.24
CUX2-202ENST00000397643 PRAMEF26H0Y7S4 382 aa16.58■□□□□ 0.24
CUX2-202ENST00000397643 IGLV3-25P01717 112 aa16.58■□□□□ 0.24
CUX2-202ENST00000397643 CKMT1AP12532 417 aa16.58■□□□□ 0.24
CUX2-202ENST00000397643 PDGFRAP16234 1089 aa16.58■□□□□ 0.24
CUX2-202ENST00000397643 VASPP50552 380 aaPredicted RBP16.58■□□□□ 0.24
CUX2-202ENST00000397643 PLK1P53350 603 aa16.58■□□□□ 0.24
CUX2-202ENST00000397643 TMPRSS3P57727 454 aa16.58■□□□□ 0.24
CUX2-202ENST00000397643 RHDQ02161 417 aa16.58■□□□□ 0.24
CUX2-202ENST00000397643 EIF4EBP2Q13542 120 aaPredicted RBP16.58■□□□□ 0.24
CUX2-202ENST00000397643 SLC12A1Q13621 1099 aa16.58■□□□□ 0.24
CUX2-202ENST00000397643 STAT4Q14765 748 aa16.58■□□□□ 0.24
CUX2-202ENST00000397643 SETMARQ53H47 684 aaPredicted RBP16.58■□□□□ 0.24
CUX2-202ENST00000397643 TAF1BQ53T94 588 aaPredicted RBP16.58■□□□□ 0.24
CUX2-202ENST00000397643 CXorf57Q6NSI4 855 aaKnown RBP16.58■□□□□ 0.24
CUX2-202ENST00000397643 BEND5Q7L4P6 421 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms