RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 ATP9AO75110 1047 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 CSDE1O75534 798 aaKnown RBP8.29□□□□□ -1.08
LIMS1-203ENST00000393310 PYGMP11217 842 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 VBP1P61758 197 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 ITPRIPL1Q6GPH6 555 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 CYB5R4Q7L1T6 521 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 CDR2LQ86X02 465 aaPredicted RBP8.29□□□□□ -1.08
LIMS1-203ENST00000393310 SIAH1Q8IUQ4 282 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 TRMT2AQ8IZ69 625 aaKnown RBP8.29□□□□□ -1.08
LIMS1-203ENST00000393310 OR14C36Q8NHC7 312 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 DPYSL5Q9BPU6 564 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 FAM213AQ9BRX8 229 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 COX16Q9P0S2 106 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 CIDEBQ9UHD4 219 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 MMP17Q9ULZ9 603 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 SEC23IPQ9Y6Y8 1000 aaKnown RBP8.29□□□□□ -1.08
LIMS1-203ENST00000393310 XPO1O14980 1071 aaKnown RBP8.29□□□□□ -1.08
LIMS1-203ENST00000393310 RFPL3O75679 317 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 GNA14O95837 355 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 SERPINF2P08697 491 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 KRT16P08779 473 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 CCNYL3P0C7X3 344 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 HADHAP40939 763 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 IL12RB1P42701 662 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 VAC14Q08AM6 782 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 FCHO2Q0JRZ9 810 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 MINDY1Q8N5J2 469 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 TXNDC5Q8NBS9 432 aaKnown RBP8.29□□□□□ -1.08
LIMS1-203ENST00000393310 CEP19Q96LK0 163 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 ACBD6Q9BR61 282 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 TRIT1Q9H3H1 467 aaKnown RBP8.29□□□□□ -1.08
LIMS1-203ENST00000393310 CYP3A43Q9HB55 503 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 MAD1L1Q9Y6D9 718 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 SYNJ2BP-COX16A0A087WUM0 186 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 SMIM28A0A1B0GU29 152 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 TDP2O95551 362 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 SYF2O95926 243 aaKnown RBP8.29□□□□□ -1.08
LIMS1-203ENST00000393310 TARSP26639 723 aaKnown RBP8.29□□□□□ -1.08
LIMS1-203ENST00000393310 STX1BP61266 288 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 NNTQ13423 1086 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 TBC1D25Q3MII6 688 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 ATL3Q6DD88 541 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 BORAQ6PGQ7 559 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 TMPRSS12Q86WS5 348 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 WDR36Q8NI36 951 aaKnown RBP8.29□□□□□ -1.08
LIMS1-203ENST00000393310 ECT2Q9H8V3 914 aa8.29□□□□□ -1.08
LIMS1-203ENST00000393310 TEX51A0A1B0GUA7 166 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 NEDD8-MDP1E9PL57 170 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 KPNA3O00505 521 aaPredicted RBP8.28□□□□□ -1.08
LIMS1-203ENST00000393310 ARHGEF9O43307 516 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 IL1BP01584 269 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 HMBSP08397 361 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 GSTA2P09210 222 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 ATF6P18850 670 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 CD72P21854 359 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 TKTP29401 623 aaKnown RBP8.28□□□□□ -1.08
LIMS1-203ENST00000393310 HMOX2P30519 316 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 HSPA9P38646 679 aaKnown RBP8.28□□□□□ -1.08
LIMS1-203ENST00000393310 ATP2C1P98194 919 aaPredicted RBP8.28□□□□□ -1.08
LIMS1-203ENST00000393310 MTAPQ13126 283 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 ILKQ13418 452 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 GRM3Q14832 879 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 ERLEC1Q96DZ1 483 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 CLMPQ9H6B4 373 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 ADAMTS1Q9UHI8 967 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 SLC27A5Q9Y2P5 690 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 MKRN2OSH3BPM6 223 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 INMTO95050 263 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 CD63P08962 238 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 PLCG1P19174 1290 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 NDUFV2P19404 249 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 AKR1D1P51857 326 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 TCEAL1Q15170 157 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 WDR72Q3MJ13 1102 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 PKN3Q6P5Z2 889 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 FBXO38Q6PIJ6 1188 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 TRIM69Q86WT6 500 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 LZTR1Q8N653 840 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 TMEM176AQ96HP8 235 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 ART5Q96L15 291 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 CNTNAP3BQ96NU0 1288 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 QKIQ96PU8 341 aaKnown RBP eCLIP8.28□□□□□ -1.087e-12■■■■■ 80.9
LIMS1-203ENST00000393310 MNTQ99583 582 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 C17orf62Q9BQA9 187 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 CNTNAP3Q9BZ76 1288 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 SLAMF7Q9NQ25 335 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 ITIH6Q6UXX5 1313 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 BCLAF3A2AJT9 711 aaKnown RBP8.28□□□□□ -1.08
LIMS1-203ENST00000393310 BHMG1C9JSJ3 638 aaPredicted RBP8.28□□□□□ -1.08
LIMS1-203ENST00000393310 AGFG2O95081 481 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 WASP42768 502 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 EIF2B2P49770 351 aaKnown RBP8.28□□□□□ -1.08
LIMS1-203ENST00000393310 POLR2LP62875 67 aaKnown RBP8.28□□□□□ -1.08
LIMS1-203ENST00000393310 LRP8Q14114 963 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 ZNF268Q14587 947 aaPredicted RBP8.28□□□□□ -1.08
LIMS1-203ENST00000393310 COLGALT2Q8IYK4 626 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 ZNF75CPQ92670 426 aaPredicted RBP8.28□□□□□ -1.08
LIMS1-203ENST00000393310 C18orf25Q96B23 403 aaPredicted RBP8.28□□□□□ -1.08
LIMS1-203ENST00000393310 FAXDC2Q96IV6 333 aa8.28□□□□□ -1.08
LIMS1-203ENST00000393310 DNPEPQ9ULA0 475 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms