RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 CCDC154A6NI56 674 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 MEIS2O14770 477 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 POMCP01189 267 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 BFSP2Q13515 415 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 C16orf72Q14CZ0 275 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 DEFB115Q30KQ5 88 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 TMEM26Q6ZUK4 368 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 TRIM48Q8IWZ4 208 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 IQCKQ8N0W5 287 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 SPATA20Q8TB22 786 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 TRPC4APQ8TEL6 797 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 SEMA4DQ92854 862 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 CDHR5Q9HBB8 845 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 AHSPQ9NZD4 102 aa11.63□□□□□ -0.55
PTPRF-203ENST00000372407 PSMD12O00232 456 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-203ENST00000372407 KATNA1O75449 491 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 BST1Q10588 318 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 ANGPT1Q15389 498 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 IRF2BP2Q7Z5L9 587 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 TMEM161BQ8NDZ6 487 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 ULBP1Q9BZM6 244 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 KLHL28Q9NXS3 571 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 TPRKBQ9Y3C4 175 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 NFASCO94856 1347 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 FAM220BPB1ANY3 271 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 ERVK-10P10266 1014 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 MARCKSL1P49006 195 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 ZNF143P52747 638 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-203ENST00000372407 PKNOX1P55347 436 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 RHBDL3P58872 404 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 FMO1Q01740 532 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 SKIV2LQ15477 1246 aaKnown RBP11.62□□□□□ -0.55
PTPRF-203ENST00000372407 C15orf59Q2T9L4 293 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-203ENST00000372407 ZACNQ401N2 412 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 ATP13A4Q4VNC1 1196 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 DNAJC14Q6Y2X3 702 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-203ENST00000372407 MILR1Q7Z6M3 343 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 HERC6Q8IVU3 1022 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 ACMSDQ8TDX5 336 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 PYDC1Q8WXC3 89 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 ART4Q93070 314 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 RNF157Q96PX1 679 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 CIPCQ9C0C6 399 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 ACSS3Q9H6R3 686 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 KRCC1Q9NPI7 259 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-203ENST00000372407 BTBD7Q9P203 1132 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 ENOPH1Q9UHY7 261 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 SEC22BO75396 215 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 MED26O95402 600 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 ADRB2P07550 413 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 DRD4P21917 467 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 TALDO1P37837 337 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 RPS7P62081 194 aaKnown RBP11.62□□□□□ -0.55
PTPRF-203ENST00000372407 NEDD8Q15843 81 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 DDR2Q16832 855 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 CHMP1BQ7LBR1 199 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 ALLCQ8N6M5 410 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 ZNF614Q8N883 585 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 MCOLN3Q8TDD5 553 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 MIEF2Q96C03 454 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 MPP4Q96JB8 637 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 APOL4Q9BPW4 351 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 TBL1YQ9BQ87 522 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 TKTL2Q9H0I9 626 aa11.62□□□□□ -0.55
PTPRF-203ENST00000372407 DDX18Q9NVP1 670 aaKnown RBP11.62□□□□□ -0.55
PTPRF-203ENST00000372407 RGS17Q9UGC6 210 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-203ENST00000372407 COL16A1Q07092 1604 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-203ENST00000372407 SPTLC1O15269 473 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 ITGAVP06756 1048 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 YWHAQP27348 245 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 CYP2C18P33260 490 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 TTKP33981 857 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 RFX3P48380 749 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 ARMC4Q5T2S8 1044 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 UNC5AQ6ZN44 842 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 POLNQ7Z5Q5 900 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 CAMK1DQ8IU85 385 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 OR8H2Q8N162 312 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 PTPRHQ9HD43 1115 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 XPNPEP3Q9NQH7 507 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 TRPC4Q9UBN4 977 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 KLHL3Q9UH77 587 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 FAM237BA0A1B0GVD1 139 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 PDZK1P1A8MUH7 402 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 PARNO95453 639 aaKnown RBP11.61□□□□□ -0.55
PTPRF-203ENST00000372407 PCNAP12004 261 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 VCLP18206 1134 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 LBPP18428 481 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 EPHB3P54753 998 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 PURAQ00577 322 aaKnown RBP11.61□□□□□ -0.55
PTPRF-203ENST00000372407 ARCQ7LC44 396 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 HDDC2Q7Z4H3 204 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 PHF13Q86YI8 300 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-203ENST00000372407 ACTRT2Q8TDY3 377 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 TMEM159Q96B96 161 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 CERS2Q96G23 380 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 HSD17B14Q9BPX1 270 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 MRIQ9BWK5 157 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 POMKQ9H5K3 350 aa11.61□□□□□ -0.55
PTPRF-203ENST00000372407 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms