RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 KAT7O95251 611 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 GSRP00390 522 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 KRT14P02533 472 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 ALPPL2P10696 532 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 TCF3P15923 654 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 LILRA6Q6PI73 481 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 ZC3H18Q86VM9 953 aaKnown RBP9.39□□□□□ -0.91
UPF2-202ENST00000357604 BBS7Q8IWZ6 715 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 TMEM248Q9NWD8 314 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 CES2O00748 559 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 STC2O76061 302 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 MTA2O94776 668 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 VIPR2P41587 438 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 SCNN1BP51168 640 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 MPP3Q13368 585 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 GLE1Q53GS7 698 aaKnown RBP9.39□□□□□ -0.91
UPF2-202ENST00000357604 MPP7Q5T2T1 576 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 LYPLAL1Q5VWZ2 237 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 RFWD3Q6PCD5 774 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 CENPUQ71F23 418 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 CCDC25Q86WR0 208 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 FOXJ1Q92949 421 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 SGK2Q9HBY8 427 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 AASDHPPTQ9NRN7 309 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 OAS1P00973 400 aaKnown RBP9.39□□□□□ -0.91
UPF2-202ENST00000357604 CALCAP01258 141 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 CXCL12P48061 93 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 VCPP55072 806 aaKnown RBP9.39□□□□□ -0.91
UPF2-202ENST00000357604 WNT7BP56706 349 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 STAT4Q14765 748 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 C2CD6Q53TS8 623 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 ATOH1Q92858 354 aaPredicted RBP9.39□□□□□ -0.91
UPF2-202ENST00000357604 CCDC97Q96F63 343 aaPredicted RBP9.39□□□□□ -0.91
UPF2-202ENST00000357604 LRIG1Q96JA1 1093 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 BTBD6Q96KE9 485 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 ASB16Q96NS5 453 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 TUBGCP5Q96RT8 1024 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 KCTD15Q96SI1 283 aaPredicted RBP9.39□□□□□ -0.91
UPF2-202ENST00000357604 CARD6Q9BX69 1037 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 CARD9Q9H257 536 aa9.39□□□□□ -0.91
UPF2-202ENST00000357604 DRG1Q9Y295 367 aaKnown RBP9.39□□□□□ -0.91
UPF2-202ENST00000357604 ESPNB1AK53 854 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 AP5Z1O43299 807 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 BUB1BO60566 1050 aaPredicted RBP9.38□□□□□ -0.91
UPF2-202ENST00000357604 NTSR1P30989 418 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 SETMARQ53H47 684 aaPredicted RBP9.38□□□□□ -0.91
UPF2-202ENST00000357604 VSIG1Q86XK7 387 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 HEXDCQ8WVB3 486 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 PGAP3Q96FM1 320 aaPredicted RBP9.38□□□□□ -0.91
UPF2-202ENST00000357604 HACD3Q9P035 362 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 AMACRQ9UHK6 382 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 USP3Q9Y6I4 520 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 KCNA4P22459 653 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 CCNCP24863 283 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 HOXC13P31276 330 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 CTNNA1P35221 906 aaKnown RBP9.38□□□□□ -0.91
UPF2-202ENST00000357604 NUBP1P53384 320 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 ARMC6Q6NXE6 501 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 PDIK1LQ8N165 341 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 DCAF4L2Q8NA75 395 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 FAM129AQ9BZQ8 928 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 TTYH1Q9H313 450 aaPredicted RBP9.38□□□□□ -0.91
UPF2-202ENST00000357604 RBM22Q9NW64 420 aaKnown RBP eCLIP9.38□□□□□ -0.91
UPF2-202ENST00000357604 AKAP7Q9P0M2 348 aaPredicted RBP9.38□□□□□ -0.91
UPF2-202ENST00000357604 FAM153AQ9UHL3 310 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 DUSP12Q9UNI6 340 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 TBC1D30Q9Y2I9 924 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 AMPD1P23109 780 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 THOP1P52888 689 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 HDAC4P56524 1084 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 USP46P62068 366 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 PRAMEP78395 509 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 PITRM1Q5JRX3 1037 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 KBTBD6Q86V97 674 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 HMGB4Q8WW32 186 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 NDRG1Q92597 394 aaKnown RBP9.38□□□□□ -0.91
UPF2-202ENST00000357604 SIPA1Q96FS4 1042 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 SNF8Q96H20 258 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 FEM1CQ96JP0 617 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 FOPNLQ96NB1 174 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 SLC46A2Q9BY10 475 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 STARD13Q9Y3M8 1113 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 COL4A6Q14031 1691 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 CACNB4O00305 520 aaPredicted RBP9.38□□□□□ -0.91
UPF2-202ENST00000357604 STX7O15400 261 aaKnown RBP9.38□□□□□ -0.91
UPF2-202ENST00000357604 SYPP08247 313 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 ITGALP20701 1170 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 DNAJB1P25685 340 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 DHPSP49366 369 aaPredicted RBP9.38□□□□□ -0.91
UPF2-202ENST00000357604 EPHA5P54756 1037 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 ZBTB16Q05516 673 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 KCNT1Q5JUK3 1230 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 RNF135Q8IUD6 432 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 FAM174AQ8TBP5 190 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 IFT81Q8WYA0 676 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 TCEAL4Q96EI5 215 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 CELF6Q96J87 481 aaKnown RBP9.38□□□□□ -0.91
UPF2-202ENST00000357604 MIR1-1HGQ9H1L0 117 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 KCNK12Q9HB15 430 aa9.38□□□□□ -0.91
UPF2-202ENST00000357604 TRPV4Q9HBA0 871 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms