RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 IFI16Q16666 785 aaKnown RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 XKR9Q5GH70 373 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 DCAF17Q5H9S7 520 aaPredicted RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 LRRC38Q5VT99 294 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 KCTD11Q693B1 232 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 MIS18BP1Q6P0N0 1132 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 PMF1Q6P1K2 205 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 FAM171BQ6P995 826 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 EMBQ6PCB8 327 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 LCLAT1Q6UWP7 414 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 MMS22LQ6ZRQ5 1243 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 CAND1Q86VP6 1230 aaKnown RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 TP53INP2Q8IXH6 220 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 KRT222Q8N1A0 295 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 CRYBG2Q8N1P7 616 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 SH2D3CQ8N5H7 860 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 ALLCQ8N6M5 410 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 FBXO25Q8TCJ0 367 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 AFG1LQ8WV93 481 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 ARNTL2Q8WYA1 636 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 PRCCQ92733 491 aaPredicted RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 C18orf25Q96B23 403 aaPredicted RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 CCDC34Q96HJ3 373 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 CAPZA3Q96KX2 299 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 MAGEB10Q96LZ2 347 aaPredicted RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 NOX5Q96PH1 765 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 DDX23Q9BUQ8 820 aaKnown RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 NUP85Q9BW27 656 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 CDH19Q9H159 772 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 SLITRK6Q9H5Y7 841 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 KCNK13Q9HB14 408 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 GPR27Q9NS67 375 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 CISHQ9NSE2 258 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 LARSQ9P2J5 1176 aaKnown RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 UVRAGQ9P2Y5 699 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 GABRQQ9UN88 632 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 DERAQ9Y315 318 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 PCDHB2Q9Y5E7 798 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 DOCK8Q8NF50 2099 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 DMXL1Q9Y485 3027 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 A0A087WZ62 844 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 SMIM35A0A1B0GVV1 85 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 FAM92AA1XBS5 289 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 SIGLEC16A6NMB1 481 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 HRKO00198 91 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 ZNF195O14628 629 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 MAGEB2O15479 319 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 PAPSS1O43252 624 aaPredicted RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 DAPK3O43293 454 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 PSTPIP1O43586 416 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 TMEM63AO94886 807 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 ABLIM3O94929 683 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 NTRK1P04629 796 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 CD1EP15812 388 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 GRK2P25098 689 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 RFC1P35251 1148 aaPredicted RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 GRK3P35626 688 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 GNALP38405 381 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 GPR3P46089 330 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 CDK7P50613 346 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 EPHB4P54760 987 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 EGR3Q06889 387 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 TRAF1Q13077 416 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 TUBB3Q13509 450 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 DPYSQ14117 519 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 DPYSL3Q14195 570 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 DHCR24Q15392 516 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 HABP4Q5JVS0 413 aaKnown RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 PRAMEF19Q5SWL8 479 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 FNBP1LQ5T0N5 605 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 ARHGAP17Q68EM7 881 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 POMZP3Q6PJE2 187 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 CEP68Q76N32 757 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 ASRGL1Q7L266 308 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 TRMT1LQ7Z2T5 733 aaKnown RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 POLNQ7Z5Q5 900 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 NLRX1Q86UT6 975 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 EXOC3L1Q86VI1 746 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 CILP2Q8IUL8 1156 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 LYSMD2Q8IV50 215 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 SCML4Q8N228 414 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 ZNF655Q8N720 491 aaPredicted RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 C12orf29Q8N999 325 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 C3orf20Q8ND61 904 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 TTC8Q8TAM2 541 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 ZNF564Q8TBZ8 553 aaPredicted RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 DCAKDQ8WVC6 231 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 PGAP3Q96FM1 320 aaPredicted RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 LRGUKQ96M69 825 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 PPP1R16BQ96T49 567 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 KRT12Q99456 494 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 TSG101Q99816 390 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 FDXACB1Q9BRP7 624 aaPredicted RBP2.42□□□□□ -2.02
VPS54-202ENST00000354504 SPON1Q9HCB6 807 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 TMLHEQ9NVH6 421 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 DUSP13Q9UII6 198 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 C2CD2Q9Y426 696 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 CEP192Q8TEP8 1941 aa2.42□□□□□ -2.02
VPS54-202ENST00000354504 SCO2A0A1W2PP80 73 aa2.41□□□□□ -2.02
VPS54-202ENST00000354504 CTAGE15A4D2H0 777 aa2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms