RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 NME3Q13232 169 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 PITRM1Q5JRX3 1037 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 LAYNQ6UX15 382 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 CDR2LQ86X02 465 aaPredicted RBP13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 FLAD1Q8NFF5 587 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 RXFP2Q8WXD0 754 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 AGAP3Q96P47 875 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 HNRNPABQ99729 332 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 ADPGKQ9BRR6 497 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 TCHPQ9BT92 498 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 IDI2Q9BXS1 227 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 CLK4Q9HAZ1 481 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 SNX15Q9NRS6 342 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 DUS2Q9NX74 493 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 ZNF831Q5JPB2 1677 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 SAC3D1A6NKF1 404 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 KCNU1A8MYU2 1149 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 G3V2L1 256 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 H3BMQ9 156 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 PDGFRAP16234 1089 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 SAT1P21673 171 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 TMED10P49755 219 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 BMXP51813 675 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 PGM5Q15124 567 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 EGFLAMQ63HQ2 1017 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 PPP1R2P3Q6NXS1 205 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 GK5Q6ZS86 529 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 SETD3Q86TU7 594 aaPredicted RBP13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 IFNLR1Q8IU57 520 aaPredicted RBP13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 HERC6Q8IVU3 1022 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 CCDC60Q8IWA6 550 aaPredicted RBP13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 PGAM4Q8N0Y7 254 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 DDHD1Q8NEL9 900 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 ZNF668Q96K58 619 aaPredicted RBP13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 COG8Q96MW5 612 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 RPF2Q9H7B2 306 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 CXorf21Q9HAI6 301 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 NGRNQ9NPE2 291 aaKnown RBP13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 PNPLA3Q9NST1 481 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 ANKRD31Q8N7Z5 1873 aa13.72□□□□□ -0.21
CCDC88C-201ENST00000331194 FAM149AA5PLN7 773 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 E7ENX8 843 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 CAPNS1P04632 268 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 ZNF182P17025 639 aaPredicted RBP13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 TFE3P19532 575 aaPredicted RBP13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 POLR2BP30876 1174 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 BAG6P46379 1132 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 YWHAEP62258 255 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 NIPAL4Q0D2K0 466 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 PTK2BQ14289 1009 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 DCLK2Q8N568 766 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 DEPTORQ8TB45 409 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 SLC7A3Q8WY07 619 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 ZNF518BQ9C0D4 1074 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 ZDHHC2Q9UIJ5 367 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 FIS1Q9Y3D6 152 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 PCDHA10Q9Y5I2 948 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 PTPRFP10586 1907 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 HMOX2P30519 316 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 CDH5P33151 784 aaPredicted RBP13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 YAP1P46937 504 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 TGFB2P61812 414 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 FSTL1Q12841 308 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 ITGADQ13349 1161 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 RSBN1LQ6PCB5 846 aaPredicted RBP13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 ZBTB49Q6ZSB9 765 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 RP9Q8TA86 221 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 APBB2Q92870 758 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 AGAP2Q99490 1192 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 OSBPL11Q9BXB4 747 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 NIF3L1Q9GZT8 377 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 PDLIM7Q9NR12 457 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 SACM1LQ9NTJ5 587 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 TSC22D4Q9Y3Q8 395 aa13.71□□□□□ -0.21
CCDC88C-201ENST00000331194 TCAF2A6NFQ2 919 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 C9IYK1 514 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 MATN2O00339 956 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 APOL1O14791 398 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 PRPSAP2O60256 369 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 ENDOD1O94919 500 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 LDHAP00338 332 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 IDO1P14902 403 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 GLRBP48167 497 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 CLCN2P51788 898 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 ATXN1P54253 815 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 TFDP2Q14188 446 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 DACT2Q5SW24 774 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 LDLRAP1Q5SW96 308 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 DCLRE1AQ6PJP8 1040 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 C14orf80Q86SX3 495 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 SLC15A4Q8N697 577 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 LPGAT1Q92604 370 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 RMDN3Q96TC7 470 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 MUC3BQ9H195 1237 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 GOLGA8TH3BQL2 631 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 PIGNO95427 931 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 KRT19P08727 400 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 CCDC130P13994 396 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 MX2P20592 715 aa13.7□□□□□ -0.22
CCDC88C-201ENST00000331194 ESRRGP62508 458 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms