RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 TCF25Q9BQ70 676 aa18.84■□□□□ 0.61
USP39-201ENST00000323701 C17orf80Q9BSJ5 609 aa18.84■□□□□ 0.61
USP39-201ENST00000323701 GBA3Q9H227 469 aa18.84■□□□□ 0.61
USP39-201ENST00000323701 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.84■□□□□ 0.61
USP39-201ENST00000323701 SMPD4Q9NXE4 827 aa18.84■□□□□ 0.61
USP39-201ENST00000323701 RSPH14Q9UHP6 348 aa18.84■□□□□ 0.61
USP39-201ENST00000323701 LGALS13Q9UHV8 139 aa18.84■□□□□ 0.61
USP39-201ENST00000323701 J3KR12 359 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 SHOX2O60902 331 aaPredicted RBP18.83■□□□□ 0.61
USP39-201ENST00000323701 PEX11BO96011 259 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 F11P03951 625 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 CAPN2P17655 700 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 VEPH1Q14D04 833 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 KCTD11Q693B1 232 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 TXNDC8Q6A555 127 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 FAM109BQ6ICB4 259 aaPredicted RBP18.83■□□□□ 0.61
USP39-201ENST00000323701 KLHDC10Q6PID8 442 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 HS6ST3Q8IZP7 471 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 LGI2Q8N0V4 545 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 SPATA22Q8NHS9 363 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 ZFRQ96KR1 1074 aaKnown RBP18.83■□□□□ 0.61
USP39-201ENST00000323701 FERMT1Q9BQL6 677 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 CAPS2Q9BXY5 557 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 ACSS3Q9H6R3 686 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 ZC3H7BQ9UGR2 993 aaKnown RBP18.83■□□□□ 0.61
USP39-201ENST00000323701 SZT2Q5T011 3432 aa18.83■□□□□ 0.61
USP39-201ENST00000323701 ARHGAP42A6NI28 874 aa18.83■□□□□ 0.6
USP39-201ENST00000323701 CDH16O75309 829 aa18.83■□□□□ 0.6
USP39-201ENST00000323701 BMPR1AP36894 532 aa18.83■□□□□ 0.6
USP39-201ENST00000323701 EPHB3P54753 998 aa18.83■□□□□ 0.6
USP39-201ENST00000323701 SESN2P58004 480 aaPredicted RBP18.83■□□□□ 0.6
USP39-201ENST00000323701 TMED2Q15363 201 aa18.83■□□□□ 0.6
USP39-201ENST00000323701 GAREM2Q75VX8 874 aa18.83■□□□□ 0.6
USP39-201ENST00000323701 OR52K2Q8NGK3 314 aa18.83■□□□□ 0.6
USP39-201ENST00000323701 ARHGEF2Q92974 986 aaKnown RBP18.83■□□□□ 0.6
USP39-201ENST00000323701 KLHL5Q96PQ7 755 aa18.83■□□□□ 0.6
USP39-201ENST00000323701 APOL2Q9BQE5 337 aa18.83■□□□□ 0.6
USP39-201ENST00000323701 EIF2B3Q9NR50 452 aaKnown RBP18.83■□□□□ 0.6
USP39-201ENST00000323701 TMEM51Q9NW97 253 aa18.83■□□□□ 0.6
USP39-201ENST00000323701 IPO11Q9UI26 975 aaKnown RBP18.83■□□□□ 0.6
USP39-201ENST00000323701 TTLL3Q9Y4R7 772 aa18.83■□□□□ 0.6
USP39-201ENST00000323701 MAD1L1Q9Y6D9 718 aa18.83■□□□□ 0.6
USP39-201ENST00000323701 GRXCR1A8MXD5 290 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 ACSL4O60488 711 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 CTNNB1P35222 781 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 KBTBD12Q3ZCT8 623 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 UNC5AQ6ZN44 842 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 UNC5BQ8IZJ1 945 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 OR52K1Q8NGK4 314 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 ARNTL2Q8WYA1 636 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 PRICKLE1Q96MT3 831 aaPredicted RBP18.82■□□□□ 0.6
USP39-201ENST00000323701 CDK5RAP1Q96SZ6 601 aaKnown RBP18.82■□□□□ 0.6
USP39-201ENST00000323701 IL12RB2Q99665 862 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 CCDC77Q9BR77 488 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 KLF16Q9BXK1 252 aaPredicted RBP18.82■□□□□ 0.6
USP39-201ENST00000323701 FRMD8Q9BZ67 464 aaPredicted RBP18.82■□□□□ 0.6
USP39-201ENST00000323701 OBSL1O75147 1896 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 RASA4BC9J798 803 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 MATN3O15232 486 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 MTSS1O43312 755 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 RASA4O43374 803 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 MT-CYBP00156 380 aaPredicted RBP18.82■□□□□ 0.6
USP39-201ENST00000323701 MGAT1P26572 445 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 CORO1AP31146 461 aaKnown RBP18.82■□□□□ 0.6
USP39-201ENST00000323701 MMP13P45452 471 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 KPNA1P52294 538 aaPredicted RBP18.82■□□□□ 0.6
USP39-201ENST00000323701 RPS24P62847 133 aaKnown RBP18.82■□□□□ 0.6
USP39-201ENST00000323701 GNGT1P63211 74 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 COG7P83436 770 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 PLPP4Q5VZY2 271 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 LRRC8BQ6P9F7 803 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 TRMT10BQ6PF06 316 aaKnown RBP18.82■□□□□ 0.6
USP39-201ENST00000323701 LEKR1Q6ZMV7 388 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 GPR65Q8IYL9 337 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 SLC22A17Q8WUG5 538 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 EBNA1BP2Q99848 306 aaKnown RBP18.82■□□□□ 0.6
USP39-201ENST00000323701 RABEP2Q9H5N1 569 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 KIF9Q9HAQ2 790 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 XAB2Q9HCS7 855 aaKnown RBP18.82■□□□□ 0.6
USP39-201ENST00000323701 TRPC7Q9HCX4 862 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 SMYD2Q9NRG4 433 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 TRHDEQ9UKU6 1024 aa18.82■□□□□ 0.6
USP39-201ENST00000323701 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.81■□□□□ 0.6
USP39-201ENST00000323701 LINC01553A4QN01 128 aa18.81■□□□□ 0.6
USP39-201ENST00000323701 CXorf49A8MYA2 514 aaPredicted RBP18.81■□□□□ 0.6
USP39-201ENST00000323701 AP2A1O95782 977 aa18.81■□□□□ 0.6
USP39-201ENST00000323701 HLA-DQB2P05538 268 aa18.81■□□□□ 0.6
USP39-201ENST00000323701 IVLP07476 585 aa18.81■□□□□ 0.6
USP39-201ENST00000323701 ACVRL1P37023 503 aa18.81■□□□□ 0.6
USP39-201ENST00000323701 MDH1P40925 334 aaKnown RBP18.81■□□□□ 0.6
USP39-201ENST00000323701 CYP4F8P98187 520 aa18.81■□□□□ 0.6
USP39-201ENST00000323701 CDK16Q00536 496 aa18.81■□□□□ 0.6
USP39-201ENST00000323701 ZNF33AQ06730 810 aa18.81■□□□□ 0.6
USP39-201ENST00000323701 CAMK1Q14012 370 aa18.81■□□□□ 0.6
USP39-201ENST00000323701 MPP2Q14168 576 aa18.81■□□□□ 0.6
USP39-201ENST00000323701 CROCCP2Q86T23 111 aa18.81■□□□□ 0.6
USP39-201ENST00000323701 ARL14EPQ8N8R7 260 aaPredicted RBP18.81■□□□□ 0.6
USP39-201ENST00000323701 ADAMTS19Q8TE59 1207 aa18.81■□□□□ 0.6
USP39-201ENST00000323701 LRRC3Q9BY71 257 aa18.81■□□□□ 0.6
USP39-201ENST00000323701 AGO1Q9UL18 857 aaKnown RBP18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms