RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 SSTR3P32745 418 aaPredicted RBP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 SLC18A2Q05940 514 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 EIF2AK1Q9BQI3 630 aaKnown RBP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 CCDC167Q9P0B6 97 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 SLC39A10Q9ULF5 831 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 KNDC1Q76NI1 1749 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 CCDC78A2IDD5 438 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 TIMM44O43615 452 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 IL4RP24394 825 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 HOXD13P35453 343 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 SLC16A2P36021 539 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 HSD17B4P51659 736 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 E2F2Q14209 437 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 SQLEQ14534 574 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 ANKS1BQ7Z6G8 1248 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 PIK3C3Q8NEB9 887 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 ACSF2Q96CM8 615 aaPredicted RBP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 CCDC126Q96EE4 140 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 FBXO40Q9UH90 709 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 TRIM64A6NGJ6 449 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 TRIM64BA6NI03 449 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 H0Y858 1186 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 H0YJX3 145 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 PHKG2P15735 406 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 ITGALP20701 1170 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 CRHR1P34998 444 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 HTR2BP41595 481 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 RPS9P46781 194 aaKnown RBP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 PEX3P56589 373 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 RHAGQ02094 409 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 PON2Q15165 354 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 PHKG1Q16816 387 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 ERICH5Q6P6B1 374 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 PADI6Q6TGC4 694 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 TBC1D21Q8IYX1 336 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 MCOLN2Q8IZK6 566 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 RTL3Q8N8U3 475 aaKnown RBP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 CDK5RAP1Q96SZ6 601 aaKnown RBP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 TFCP2L1Q9NZI6 479 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 SLAIN2Q9P270 581 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 PCDHGC3Q9UN70 934 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 NDUFAF1Q9Y375 327 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 MTF2Q9Y483 593 aaPredicted RBP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 TYW5A2RUC4 315 aaKnown RBP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 FOXD4Q12950 439 aaPredicted RBP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 ZNF267Q14586 743 aaPredicted RBP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 SMUG1Q53HV7 270 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 SLC44A1Q8WWI5 657 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 SPRTNQ9H040 489 aaPredicted RBP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 TMEM8AQ9HCN3 771 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 AGPAT3Q9NRZ7 376 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 VANGL2Q9ULK5 521 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 F8W810 466 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 WNT7AO00755 349 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 KLF11O14901 512 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 F8A1P23610 371 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 NR4A2P43354 598 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 PRIM2P49643 509 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 CCNIQ14094 377 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 SEC23AQ15436 765 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 ZNF57Q68EA5 555 aaPredicted RBP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 ZNF276Q8N554 614 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 ACTL9Q8TC94 416 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 SUCOQ9UBS9 1254 aaKnown RBP13.09□□□□□ -0.31
VAMP4-201ENST00000236192 ZNHIT2Q9UHR6 403 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 C3orf18Q9UK00 162 aa13.09□□□□□ -0.31
VAMP4-201ENST00000236192 A0A088AWK7 358 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 TCRBV7S2A1N4TA0A589 114 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 DCAF8L1A6NGE4 600 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 OR6C70A6NIJ9 312 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 SDR42E2A6NKP2 422 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 SNRPB2P08579 225 aaKnown RBP13.08□□□□□ -0.32
VAMP4-201ENST00000236192 PRELPP51888 382 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 SP4Q02446 784 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 FRG1Q14331 258 aaKnown RBP13.08□□□□□ -0.32
VAMP4-201ENST00000236192 NFE2Q16621 373 aaPredicted RBP13.08□□□□□ -0.32
VAMP4-201ENST00000236192 IMPG1Q17R60 797 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 SMTNL2Q2TAL5 461 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 UGT3A1Q6NUS8 523 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 CENPLQ8N0S6 344 aaPredicted RBP13.08□□□□□ -0.32
VAMP4-201ENST00000236192 CCDC24Q8N4L8 307 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 KCTD17Q8N5Z5 321 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 AZIN2Q96A70 460 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 CENPNQ96H22 339 aaPredicted RBP13.08□□□□□ -0.32
VAMP4-201ENST00000236192 PNMA5Q96PV4 448 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 RUVBL2Q9Y230 463 aaKnown RBP13.08□□□□□ -0.32
VAMP4-201ENST00000236192 SPO11Q9Y5K1 396 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 ZNF99A8MXY4 864 aaPredicted RBP13.08□□□□□ -0.32
VAMP4-201ENST00000236192 HDAC3O15379 428 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 TOP3BO95985 862 aaKnown RBP13.08□□□□□ -0.32
VAMP4-201ENST00000236192 PEX6Q13608 980 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 EPC2Q52LR7 807 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 EIF3MQ7L2H7 374 aaKnown RBP13.08□□□□□ -0.32
VAMP4-201ENST00000236192 OFCC1Q8IZS5 231 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 ZNF540Q8NDQ6 660 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 AKAP1Q92667 903 aaKnown RBP eCLIP13.08□□□□□ -0.32
VAMP4-201ENST00000236192 MARK4Q96L34 752 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 NAT9Q9BTE0 207 aa13.08□□□□□ -0.32
VAMP4-201ENST00000236192 MKRN2Q9H000 416 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms