RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 RAMP2O60895 175 aa15.03■□□□□ -0
VRK3-212ENST00000596814 HEXIM1O94992 359 aaKnown RBP15.03■□□□□ -0
VRK3-212ENST00000596814 CYBBP04839 570 aa15.03■□□□□ -0
VRK3-212ENST00000596814 FCARP24071 287 aa15.03■□□□□ -0
VRK3-212ENST00000596814 GARSP41250 739 aaKnown RBP15.03■□□□□ -0
VRK3-212ENST00000596814 SLC7A5Q01650 507 aa15.03■□□□□ -0
VRK3-212ENST00000596814 PRKD1Q15139 912 aaPredicted RBP15.03■□□□□ -0
VRK3-212ENST00000596814 CCDC85BQ15834 202 aaPredicted RBP15.03■□□□□ -0
VRK3-212ENST00000596814 C6orf118Q5T5N4 469 aa15.03■□□□□ -0
VRK3-212ENST00000596814 TPGS1Q6ZTW0 290 aa15.03■□□□□ -0
VRK3-212ENST00000596814 SYDE1Q6ZW31 735 aaPredicted RBP15.03■□□□□ -0
VRK3-212ENST00000596814 B4GALNT4Q76KP1 1039 aa15.03■□□□□ -0
VRK3-212ENST00000596814 ATPAF2Q8N5M1 289 aa15.03■□□□□ -0
VRK3-212ENST00000596814 CCNYQ8ND76 341 aa15.03■□□□□ -0
VRK3-212ENST00000596814 DDI1Q8WTU0 396 aa15.03■□□□□ -0
VRK3-212ENST00000596814 LRRN4Q8WUT4 740 aa15.03■□□□□ -0
VRK3-212ENST00000596814 SUSD6Q92537 303 aa15.03■□□□□ -0
VRK3-212ENST00000596814 GUCD1Q96NT3 240 aa15.03■□□□□ -0
VRK3-212ENST00000596814 LGMNQ99538 433 aa15.03■□□□□ -0
VRK3-212ENST00000596814 TRIM51Q9BSJ1 452 aa15.03■□□□□ -0
VRK3-212ENST00000596814 SLC39A8Q9C0K1 460 aa15.03■□□□□ -0
VRK3-212ENST00000596814 BRD8Q9H0E9 1235 aa15.03■□□□□ -0
VRK3-212ENST00000596814 NOL6Q9H6R4 1146 aaKnown RBP15.03■□□□□ -0
VRK3-212ENST00000596814 UBE2ZQ9H832 354 aaPredicted RBP15.03■□□□□ -0
VRK3-212ENST00000596814 WNT6Q9Y6F9 365 aa15.03■□□□□ -0
VRK3-212ENST00000596814 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP15.03■□□□□ -0
VRK3-212ENST00000596814 HEPACAM2A8MVW5 462 aa15.03■□□□□ -0
VRK3-212ENST00000596814 KCNN4O15554 427 aa15.03■□□□□ -0
VRK3-212ENST00000596814 ZNF189O75820 626 aaPredicted RBP15.03■□□□□ -0
VRK3-212ENST00000596814 LUC7L3O95232 432 aaKnown RBP15.03■□□□□ -0
VRK3-212ENST00000596814 VAV1P15498 845 aa15.03■□□□□ -0
VRK3-212ENST00000596814 RBL1P28749 1068 aa15.03■□□□□ -0
VRK3-212ENST00000596814 PPIDQ08752 370 aaKnown RBP15.03■□□□□ -0
VRK3-212ENST00000596814 AP1B1Q10567 949 aa15.03■□□□□ -0
VRK3-212ENST00000596814 ZNF177Q13360 481 aaPredicted RBP15.03■□□□□ -0
VRK3-212ENST00000596814 NAA30Q147X3 362 aaPredicted RBP15.03■□□□□ -0
VRK3-212ENST00000596814 SKIV2LQ15477 1246 aaKnown RBP15.03■□□□□ -0
VRK3-212ENST00000596814 ELF2Q15723 593 aa15.03■□□□□ -0
VRK3-212ENST00000596814 PARP15Q460N3 678 aa15.03■□□□□ -0
VRK3-212ENST00000596814 MPP7Q5T2T1 576 aa15.03■□□□□ -0
VRK3-212ENST00000596814 HEATR6Q6AI08 1181 aaKnown RBP15.03■□□□□ -0
VRK3-212ENST00000596814 DEFB123Q8N688 67 aa15.03■□□□□ -0
VRK3-212ENST00000596814 BHMTQ93088 406 aa15.03■□□□□ -0
VRK3-212ENST00000596814 E2F7Q96AV8 911 aa15.03■□□□□ -0
VRK3-212ENST00000596814 LRRC3BQ96PB8 259 aa15.03■□□□□ -0
VRK3-212ENST00000596814 RAB17Q9H0T7 212 aa15.03■□□□□ -0
VRK3-212ENST00000596814 ZFP14Q9HCL3 533 aa15.03■□□□□ -0
VRK3-212ENST00000596814 TARSL2A2RTX5 802 aaKnown RBP15.02□□□□□ -0.01
VRK3-212ENST00000596814 ARHGAP42A6NI28 874 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 RASA4BC9J798 803 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 RASA4O43374 803 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 IFNB1P01574 187 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 KRT14P02533 472 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 RHOCP08134 193 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 LAMP2P13473 410 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 KCNA5P22460 613 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 HOXD9P28356 352 aaPredicted RBP15.02□□□□□ -0.01
VRK3-212ENST00000596814 STIP1P31948 543 aaKnown RBP15.02□□□□□ -0.01
VRK3-212ENST00000596814 IFNAR2P48551 515 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 GDF10P55107 478 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 YBEYP58557 167 aaPredicted RBP15.02□□□□□ -0.01
VRK3-212ENST00000596814 CDH18Q13634 790 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 PTK6Q13882 451 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 POLD3Q15054 466 aaPredicted RBP15.02□□□□□ -0.01
VRK3-212ENST00000596814 KCTD19Q17RG1 926 aaPredicted RBP15.02□□□□□ -0.01
VRK3-212ENST00000596814 HABP4Q5JVS0 413 aaKnown RBP15.02□□□□□ -0.01
VRK3-212ENST00000596814 SETD3Q86TU7 594 aaPredicted RBP15.02□□□□□ -0.01
VRK3-212ENST00000596814 LRRC49Q8IUZ0 686 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 CARNMT1Q8N4J0 409 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 GPR161Q8N6U8 529 aaKnown RBP15.02□□□□□ -0.01
VRK3-212ENST00000596814 CCDC89Q8N998 374 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 FAM71DQ8N9W8 422 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 DEPDC1BQ8WUY9 529 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 OSCP1Q8WVF1 389 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 HMCESQ96FZ2 354 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 FERMT1Q9BQL6 677 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 EPC1Q9H2F5 836 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 ANKZF1Q9H8Y5 726 aa15.02□□□□□ -0.01
VRK3-212ENST00000596814 DUS2Q9NX74 493 aaKnown RBP15.02□□□□□ -0.01
VRK3-212ENST00000596814 DMGDHQ9UI17 866 aaKnown RBP15.02□□□□□ -0.01
VRK3-212ENST00000596814 UTP11Q9Y3A2 253 aaKnown RBP15.02□□□□□ -0.01
VRK3-212ENST00000596814 MYOFQ9NZM1 2061 aa15.01□□□□□ -0.01
VRK3-212ENST00000596814 UQCRHLA0A096LP55 91 aa15.01□□□□□ -0.01
VRK3-212ENST00000596814 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.01□□□□□ -0.01
VRK3-212ENST00000596814 H0Y626 953 aa15.01□□□□□ -0.01
VRK3-212ENST00000596814 UQCRHP07919 91 aa15.01□□□□□ -0.01
VRK3-212ENST00000596814 PAPOLAP51003 745 aaKnown RBP15.01□□□□□ -0.01
VRK3-212ENST00000596814 GUCY2DQ02846 1103 aa15.01□□□□□ -0.01
VRK3-212ENST00000596814 GNA12Q03113 381 aa15.01□□□□□ -0.01
VRK3-212ENST00000596814 ZNF33AQ06730 810 aa15.01□□□□□ -0.01
VRK3-212ENST00000596814 SMAD4Q13485 552 aaKnown RBP15.01□□□□□ -0.01
VRK3-212ENST00000596814 TRIP13Q15645 432 aaPredicted RBP15.01□□□□□ -0.01
VRK3-212ENST00000596814 FYB2Q5VWT5 728 aa15.01□□□□□ -0.01
VRK3-212ENST00000596814 TANGO2Q6ICL3 276 aa15.01□□□□□ -0.01
VRK3-212ENST00000596814 CXorf57Q6NSI4 855 aaKnown RBP15.01□□□□□ -0.01
VRK3-212ENST00000596814 MFN1Q8IWA4 741 aa15.01□□□□□ -0.01
VRK3-212ENST00000596814 CCDC117Q8IWD4 279 aaPredicted RBP15.01□□□□□ -0.01
VRK3-212ENST00000596814 CCDC13Q8IYE1 715 aa15.01□□□□□ -0.01
VRK3-212ENST00000596814 HTR3CQ8WXA8 447 aa15.01□□□□□ -0.01
VRK3-212ENST00000596814 IRF7Q92985 503 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms