RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 SLC45A4Q5BKX6 768 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 C6orf118Q5T5N4 469 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 ZNF783Q6ZMS7 281 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 CDKL3Q8IVW4 592 aaPredicted RBP16.56■□□□□ 0.24
SS18-211ENST00000578954 TP53INP2Q8IXH6 220 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 KLHL7Q8IXQ5 586 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 TTC16Q8NEE8 873 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 ATL2Q8NHH9 583 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 IRF7Q92985 503 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 RTP4Q96DX8 246 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 ASIC4Q96FT7 647 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 TSGA13Q96PP4 275 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 SLC39A8Q9C0K1 460 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 LINC00597Q9H2U6 94 aa16.56■□□□□ 0.24
SS18-211ENST00000578954 DUS2Q9NX74 493 aaKnown RBP16.56■□□□□ 0.24
SS18-211ENST00000578954 NUP205Q92621 2012 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 ILVBLA1L0T0 632 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 CFAP69A5D8W1 941 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 HOXC11O43248 304 aaPredicted RBP16.55■□□□□ 0.24
SS18-211ENST00000578954 RAMP2O60895 175 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 MAP3K6O95382 1288 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 IFNAR2P48551 515 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 LMNB2Q03252 620 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 PPIDQ08752 370 aaKnown RBP16.55■□□□□ 0.24
SS18-211ENST00000578954 SNX1Q13596 522 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 HTR4Q13639 388 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 SKIV2LQ15477 1246 aaKnown RBP16.55■□□□□ 0.24
SS18-211ENST00000578954 SMAD2Q15796 467 aaKnown RBP16.55■□□□□ 0.24
SS18-211ENST00000578954 GLE1Q53GS7 698 aaKnown RBP16.55■□□□□ 0.24
SS18-211ENST00000578954 RHBDF2Q6PJF5 856 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 PARM1Q6UWI2 310 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 TMEM25Q86YD3 366 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 ALLCQ8N6M5 410 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 ZNF557Q8N988 423 aaPredicted RBP16.55■□□□□ 0.24
SS18-211ENST00000578954 GRK7Q8WTQ7 553 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 FGF14Q92915 247 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 FATE1Q969F0 183 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 CELF6Q96J87 481 aaKnown RBP16.55■□□□□ 0.24
SS18-211ENST00000578954 MAGEH1Q9H213 219 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 THG1LQ9NWX6 298 aaKnown RBP16.55■□□□□ 0.24
SS18-211ENST00000578954 AMACRQ9UHK6 382 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 FEZ2Q9UHY8 353 aaPredicted RBP16.55■□□□□ 0.24
SS18-211ENST00000578954 NEU2Q9Y3R4 380 aa16.55■□□□□ 0.24
SS18-211ENST00000578954 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.54■□□□□ 0.24
SS18-211ENST00000578954 FAM187AA6NFU0 413 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 ARHGAP42A6NI28 874 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 RASA4BC9J798 803 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 H7C0C1 242 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 RASA4O43374 803 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 RAD51CO43502 376 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 NFATC1O95644 943 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 CYP17A1P05093 508 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 PSMC3P17980 439 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 STIP1P31948 543 aaKnown RBP16.54■□□□□ 0.24
SS18-211ENST00000578954 ETFBP38117 255 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 ATP5OP48047 213 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 KCNJ1P48048 391 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 OXCT1P55809 520 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 ZNF177Q13360 481 aaPredicted RBP16.54■□□□□ 0.24
SS18-211ENST00000578954 DHCR24Q15392 516 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 LY6G5CQ5SRR4 150 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 TPGS1Q6ZTW0 290 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 SYDE1Q6ZW31 735 aaPredicted RBP16.54■□□□□ 0.24
SS18-211ENST00000578954 ZC3H18Q86VM9 953 aaKnown RBP16.54■□□□□ 0.24
SS18-211ENST00000578954 CCDC105Q8IYK2 499 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 OR52K2Q8NGK3 314 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 CCDC26Q8TAB7 109 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 FIBINQ8TAL6 211 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 DDI1Q8WTU0 396 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 TFB1MQ8WVM0 346 aaKnown RBP16.54■□□□□ 0.24
SS18-211ENST00000578954 ARHGEF2Q92974 986 aaKnown RBP16.54■□□□□ 0.24
SS18-211ENST00000578954 LMLNQ96KR4 655 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 PHF7Q9BWX1 381 aaPredicted RBP16.54■□□□□ 0.24
SS18-211ENST00000578954 PLA2G2FQ9BZM2 168 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 USP29Q9HBJ7 922 aa16.54■□□□□ 0.24
SS18-211ENST00000578954 COL4A3Q01955 1670 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 NYNRINQ9P2P1 1898 aaKnown RBP16.53■□□□□ 0.24
SS18-211ENST00000578954 BHMG1C9JSJ3 638 aaPredicted RBP16.53■□□□□ 0.24
SS18-211ENST00000578954 CHADO15335 359 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 MAFKO60675 156 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 ECEL1O95672 775 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 ADH1CP00326 375 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 RHOCP08134 193 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 VAV1P15498 845 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 CCNCP24863 283 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 PAPOLAP51003 745 aaKnown RBP16.53■□□□□ 0.24
SS18-211ENST00000578954 DR1Q01658 176 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 GNA12Q03113 381 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 SERINC3Q13530 473 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 POLD3Q15054 466 aaPredicted RBP16.53■□□□□ 0.24
SS18-211ENST00000578954 PUS10Q3MIT2 529 aaKnown RBP16.53■□□□□ 0.24
SS18-211ENST00000578954 C8orf74Q6P047 294 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 DARS2Q6PI48 645 aaKnown RBP16.53■□□□□ 0.24
SS18-211ENST00000578954 MAATS1Q7Z4T9 603 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 JAMLQ86YT9 394 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 MFN1Q8IWA4 741 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 ATPAF2Q8N5M1 289 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 NETO2Q8NC67 525 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 WFDC5Q8TCV5 224 aa16.53■□□□□ 0.24
SS18-211ENST00000578954 PPM1EQ8WY54 764 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms