RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 ST6GALNAC4Q9H4F1 302 aa16.84■□□□□ 0.29
VPS53-218ENST00000575207 SYNDIG1Q9H7V2 258 aa16.84■□□□□ 0.29
VPS53-218ENST00000575207 PDE11AQ9HCR9 933 aa16.84■□□□□ 0.29
VPS53-218ENST00000575207 INTS13Q9NVM9 706 aa16.84■□□□□ 0.29
VPS53-218ENST00000575207 ERRFI1Q9UJM3 462 aaPredicted RBP16.84■□□□□ 0.29
VPS53-218ENST00000575207 A0A1W2PQH9 124 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 EFCAB7A8K855 629 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 STMND1H3BQB6 276 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 DIAPH2O60879 1101 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 CSF2P04141 144 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 LIFP15018 202 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 NME1P15531 152 aaKnown RBP16.83■□□□□ 0.28
VPS53-218ENST00000575207 ATP1A2P50993 1020 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 C1QBPQ07021 282 aaKnown RBP16.83■□□□□ 0.28
VPS53-218ENST00000575207 TRIM29Q14134 588 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 ZRSR1Q15695 479 aaKnown RBP16.83■□□□□ 0.28
VPS53-218ENST00000575207 EIF2S3LQ2VIR3 472 aaKnown RBP16.83■□□□□ 0.28
VPS53-218ENST00000575207 DEFB133Q30KQ1 61 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 SLC35F3Q8IY50 421 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 JPH3Q8WXH2 748 aaPredicted RBP16.83■□□□□ 0.28
VPS53-218ENST00000575207 TTC17Q96AE7 1141 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 ANKRD36BP1Q96IX9 119 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 MRGPRX3Q96LB0 322 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 GFM1Q96RP9 751 aaKnown RBP16.83■□□□□ 0.28
VPS53-218ENST00000575207 MED10Q9BTT4 135 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 CDH19Q9H159 772 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 KRT82Q9NSB4 513 aa16.83■□□□□ 0.28
VPS53-218ENST00000575207 TTLL8A6PVC2 850 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 AQP9O43315 295 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 CNTN5O94779 1100 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 HMBSP08397 361 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 TTC38Q5R3I4 469 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 NUGGCQ68CJ6 796 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 TCTN3Q6NUS6 607 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 ABI3BPQ7Z7G0 1075 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 DCP2Q8IU60 420 aaKnown RBP16.82■□□□□ 0.28
VPS53-218ENST00000575207 FUKQ8N0W3 1084 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 OR5B17Q8NGF7 314 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 GLMNQ92990 594 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 SAAL1Q96ER3 474 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 NOX5Q96PH1 765 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 IL12RB2Q99665 862 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 GPR27Q9NS67 375 aa16.82■□□□□ 0.28
VPS53-218ENST00000575207 K7EM74 188 aa16.81■□□□□ 0.28
VPS53-218ENST00000575207 CAPN5O15484 640 aaPredicted RBP16.81■□□□□ 0.28
VPS53-218ENST00000575207 FAM13AO94988 1023 aa16.81■□□□□ 0.28
VPS53-218ENST00000575207 LDHAP00338 332 aaKnown RBP16.81■□□□□ 0.28
VPS53-218ENST00000575207 NR1D1P20393 614 aa16.81■□□□□ 0.28
VPS53-218ENST00000575207 MZF1P28698 734 aaPredicted RBP16.81■□□□□ 0.28
VPS53-218ENST00000575207 CD70P32970 193 aa16.81■□□□□ 0.28
VPS53-218ENST00000575207 PSEN1P49768 467 aa16.81■□□□□ 0.28
VPS53-218ENST00000575207 ZNF445P59923 1031 aa16.81■□□□□ 0.28
VPS53-218ENST00000575207 SEPT6Q14141 434 aa16.81■□□□□ 0.28
VPS53-218ENST00000575207 FGL2Q14314 439 aa16.81■□□□□ 0.28
VPS53-218ENST00000575207 ZXDCQ2QGD7 858 aaPredicted RBP16.81■□□□□ 0.28
VPS53-218ENST00000575207 MMP21Q8N119 569 aa16.81■□□□□ 0.28
VPS53-218ENST00000575207 PTPRN2Q92932 1015 aa16.81■□□□□ 0.28
VPS53-218ENST00000575207 CDK5RAP1Q96SZ6 601 aaKnown RBP16.81■□□□□ 0.28
VPS53-218ENST00000575207 SRRTQ9BXP5 876 aaKnown RBP16.81■□□□□ 0.28
VPS53-218ENST00000575207 UNKQ9C0B0 810 aaKnown RBP16.81■□□□□ 0.28
VPS53-218ENST00000575207 CLIC5Q9NZA1 410 aa16.81■□□□□ 0.28
VPS53-218ENST00000575207 PHTF1Q9UMS5 762 aa16.81■□□□□ 0.28
VPS53-218ENST00000575207 ENTPD4Q9Y227 616 aa16.81■□□□□ 0.28
VPS53-218ENST00000575207 EDDM13A0A1B0GTR0 161 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 A0A1W2PQM1 296 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 H3BM21 787 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 SLC31A1O15431 190 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 NKX2-8O15522 239 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 PFKFB2O60825 505 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 IL1BP01584 269 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 ASLP04424 464 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 ZFP36L1Q07352 338 aaKnown RBP16.8■□□□□ 0.28
VPS53-218ENST00000575207 FZD2Q14332 565 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 GPRIN1Q7Z2K8 1008 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 TMPRSS9Q7Z410 1059 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 SCD5Q86SK9 330 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 STK40Q8N2I9 435 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 FAM174AQ8TBP5 190 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 WFDC5Q8TCV5 224 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 PDCD6IPQ8WUM4 868 aaKnown RBP16.8■□□□□ 0.28
VPS53-218ENST00000575207 TMA16Q96EY4 203 aaKnown RBP16.8■□□□□ 0.28
VPS53-218ENST00000575207 SLC45A3Q96JT2 553 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 LMLNQ96KR4 655 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 MYOCQ99972 504 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 RASAL2Q9UJF2 1139 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 NAGPAQ9UK23 515 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 PPM1HQ9ULR3 514 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 PADI4Q9UM07 663 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 MAP4K5Q9Y4K4 846 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 UNC13CQ8NB66 2214 aa16.8■□□□□ 0.28
VPS53-218ENST00000575207 ITIH6Q6UXX5 1313 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 TTC34A8MYJ7 566 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 TNNC2P02585 160 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 RALAP11233 206 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 METAP1P53582 386 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 MAPK10P53779 464 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 MAP3K7CLP57077 242 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 TESK1Q15569 626 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 IL17AQ16552 155 aa16.79■□□□□ 0.28
VPS53-218ENST00000575207 DCAF6Q58WW2 860 aa16.79■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms