RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 EFCAB6Q5THR3 1501 aa3.39□□□□□ -1.87
VPS35-208ENST00000568612 ADGRL3Q9HAR2 1447 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 TARBP1Q13395 1621 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 C1orf232A0A0U1RR37 186 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 CXorf49A8MYA2 514 aaPredicted RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 HIP1O00291 1037 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 RTCAO00442 366 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 TRIM24O15164 1050 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ATP9AO75110 1047 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 DAB1O75553 588 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ENDOD1O94919 500 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 EPN2O95208 641 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 FAM107AO95990 144 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 HLA-DRAP01903 254 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 RETP07949 1114 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 GNAI3P08754 354 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 SNRPA1P09661 255 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 SPATA31D3P0C874 917 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 RARBP10826 455 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 IL2RBP14784 551 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 VCLP18206 1134 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 AGXTP21549 392 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 MUTP22033 750 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 CALB2P22676 271 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 GNA11P29992 359 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 SREBF1P36956 1147 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 GNALP38405 381 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 MCAMP43121 646 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 PTDSS1P48651 473 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 KRT6CP48668 564 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ARHGDIBP52566 201 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 LIMK1P53667 647 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 CLRN1P58418 232 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 RPS3AP61247 264 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 SSTP61278 116 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 VSNL1P62760 191 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 GSTO1P78417 241 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 S100A12P80511 92 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ROR1Q01973 937 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 KIF23Q02241 960 aaPredicted RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 RELAQ04206 551 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 UBXN1Q04323 297 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 PPP3CAQ08209 521 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 FSTL1Q12841 308 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 DCTN2Q13561 401 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 ANKRD1Q15327 319 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 EZH2Q15910 746 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 GSTA3Q16772 222 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 BMT2Q1RMZ1 405 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 LETM2Q2VYF4 491 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 Q3ZCU0 254 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 LEXMQ3ZCV2 418 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 TIGD2Q4W5G0 525 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ZCWPW2Q504Y3 356 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 BRDTQ58F21 947 aaPredicted RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 BMP2KLQ5H9B9 411 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 FAM47AQ5JRC9 791 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 METTL24Q5JXM2 366 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 TTC39AQ5SRH9 613 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ATXN7L2Q5T6C5 722 aaPredicted RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 RNF220Q5VTB9 566 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 SHEQ5VZ18 495 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 AFMIDQ63HM1 303 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ATL3Q6DD88 541 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 HIBCHQ6NVY1 386 aaPredicted RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 CRTC1Q6UUV9 634 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ANGPTL8Q6UXH0 198 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 KSR2Q6VAB6 950 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 RANBP10Q6VN20 620 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 KDM7AQ6ZMT4 941 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 Q6ZNX1 250 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 RBM43Q6ZSC3 357 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 SPATA31D4Q6ZUB0 917 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 CYP4V2Q6ZWL3 525 aaPredicted RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 ANO5Q75V66 913 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 BTN2A1Q7KYR7 527 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 GDF7Q7Z4P5 450 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 PNMA8AQ86V59 439 aaPredicted RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 CLVS1Q8IUQ0 354 aaPredicted RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 NKAIN4Q8IVV8 208 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 RHOT1Q8IXI2 618 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 NUP93Q8N1F7 819 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 CCDC63Q8NA47 563 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 KCNH5Q8NCM2 988 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 PJA1Q8NG27 643 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 CDC26Q8NHZ8 85 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 MYCBPAPQ8TBZ2 947 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 PROKR1Q8TCW9 393 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 OSCP1Q8WVF1 389 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 NRG4Q8WWG1 115 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 ZNF606Q8WXB4 792 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 RUBCNQ92622 972 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 TTC17Q96AE7 1141 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 EME1Q96AY2 570 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 FAM136AQ96C01 138 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 DHX58Q96C10 678 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 TMA16Q96EY4 203 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 METTL2AQ96IZ6 378 aaKnown RBP3.38□□□□□ -1.87
VPS35-208ENST00000568612 TNIP3Q96KP6 325 aa3.38□□□□□ -1.87
VPS35-208ENST00000568612 CCDC138Q96M89 665 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms