RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 PALB2Q86YC2 1186 aa3.21□□□□□ -1.9
VPS35-207ENST00000568191 SYTL1Q8IYJ3 562 aa3.21□□□□□ -1.9
VPS35-207ENST00000568191 ADGRF3Q8IZF5 1079 aa3.21□□□□□ -1.9
VPS35-207ENST00000568191 CADM3Q8N126 398 aa3.21□□□□□ -1.9
VPS35-207ENST00000568191 OR2C3Q8N628 320 aa3.21□□□□□ -1.9
VPS35-207ENST00000568191 PHF21BQ96EK2 531 aa3.21□□□□□ -1.9
VPS35-207ENST00000568191 MYD88Q99836 296 aa3.21□□□□□ -1.9
VPS35-207ENST00000568191 PLAC1Q9HBJ0 212 aa3.21□□□□□ -1.9
VPS35-207ENST00000568191 PNRC2Q9NPJ4 139 aaKnown RBP3.21□□□□□ -1.9
VPS35-207ENST00000568191 CD93Q9NPY3 652 aa3.21□□□□□ -1.9
VPS35-207ENST00000568191 FSCN3Q9NQT6 498 aa3.21□□□□□ -1.9
VPS35-207ENST00000568191 LIN7CQ9NUP9 197 aaKnown RBP3.21□□□□□ -1.9
VPS35-207ENST00000568191 RAB21Q9UL25 225 aa3.21□□□□□ -1.9
VPS35-207ENST00000568191 TRPC5Q9UL62 973 aaPredicted RBP3.21□□□□□ -1.9
VPS35-207ENST00000568191 LOC105369274A0A096LPK9 316 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 LOC102723532A0A0G2JNH3 316 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 CXorf65A6NEN9 183 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 MBD3L5A6NJ08 208 aaPredicted RBP3.2□□□□□ -1.9
VPS35-207ENST00000568191 VWA5AO00534 786 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 DHHO43323 396 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 NCK2O43639 380 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 KRT86O43790 486 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 KIF1CO43896 1103 aaKnown RBP3.2□□□□□ -1.9
VPS35-207ENST00000568191 KAT7O95251 611 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 PAPSS2O95340 614 aaPredicted RBP3.2□□□□□ -1.9
VPS35-207ENST00000568191 GLUD1P00367 558 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 ACAA1P09110 424 aaPredicted RBP3.2□□□□□ -1.9
VPS35-207ENST00000568191 PKMP14618 531 aaKnown RBP3.2□□□□□ -1.9
VPS35-207ENST00000568191 TNFRSF8P28908 595 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 TECP42680 631 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 GLUD2P49448 558 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 CYP2J2P51589 502 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 GAS1P54826 345 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 RRP1P56182 461 aaKnown RBP3.2□□□□□ -1.9
VPS35-207ENST00000568191 ZP1P60852 638 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 RPL15P61313 204 aaKnown RBP3.2□□□□□ -1.9
VPS35-207ENST00000568191 CRYZQ08257 329 aaKnown RBP3.2□□□□□ -1.9
VPS35-207ENST00000568191 HYAL1Q12794 435 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 KRT81Q14533 505 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 GRM4Q14833 912 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 MPEG1Q2M385 716 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 FSCBQ5H9T9 825 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 ENTPD8Q5MY95 495 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 DCAF12L2Q5VW00 463 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 CCDC25Q86WR0 208 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 FAM217AQ8IXS0 508 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 OR4N4Q8N0Y3 316 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 ENDOVQ8N8Q3 282 aaKnown RBP3.2□□□□□ -1.9
VPS35-207ENST00000568191 BICD2Q8TD16 824 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 RSC1A1Q92681 617 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 INPP5DQ92835 1189 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 STK33Q9BYT3 514 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 C6orf106Q9H6K1 298 aaPredicted RBP3.2□□□□□ -1.9
VPS35-207ENST00000568191 MAP6D1Q9H9H5 199 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 TXNRD2Q9NNW7 524 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 ARFGAP3Q9NP61 516 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 SLC25A13Q9UJS0 675 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 DTX4Q9Y2E6 619 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 INSL5Q9Y5Q6 135 aa3.2□□□□□ -1.9
VPS35-207ENST00000568191 MS4A18H0YCH9 400 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 PIP5K1BO14986 540 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 ASAP2O43150 1006 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 PLA2G6O60733 806 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 RPP40O75818 363 aaKnown RBP3.19□□□□□ -1.9
VPS35-207ENST00000568191 NEURL1O76050 574 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 MYL1P05976 194 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 HOXB9P17482 250 aaPredicted RBP3.19□□□□□ -1.9
VPS35-207ENST00000568191 KLRC2P26717 231 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 PCYT1AP49585 367 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 DSCR9P59020 149 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 RPL36AP83881 106 aaKnown RBP3.19□□□□□ -1.9
VPS35-207ENST00000568191 STARD3Q14849 445 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 HSP90AB2PQ58FF8 381 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 FNBP1LQ5T0N5 605 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 TRILQ7L0X0 811 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 CTU1Q7Z7A3 348 aaKnown RBP3.19□□□□□ -1.9
VPS35-207ENST00000568191 HMGB4Q8WW32 186 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 KAT2AQ92830 837 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 BRD8Q9H0E9 1235 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 TP63Q9H3D4 680 aaPredicted RBP3.19□□□□□ -1.9
VPS35-207ENST00000568191 ACTR5Q9H9F9 607 aaPredicted RBP3.19□□□□□ -1.9
VPS35-207ENST00000568191 IL36RNQ9UBH0 155 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 BAG5Q9UL15 447 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 MAGED2Q9UNF1 606 aaPredicted RBP3.19□□□□□ -1.9
VPS35-207ENST00000568191 PCDHGB2Q9Y5G2 931 aa3.19□□□□□ -1.9
VPS35-207ENST00000568191 COPG1Q9Y678 874 aaKnown RBP3.19□□□□□ -1.9
VPS35-207ENST00000568191 PCDH17O14917 1159 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 DNPH1O43598 174 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 CCNT1O60563 726 aaKnown RBP3.18□□□□□ -1.9
VPS35-207ENST00000568191 TM4SF4P48230 202 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 ART1P52961 327 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 POU3F1Q03052 451 aaPredicted RBP3.18□□□□□ -1.9
VPS35-207ENST00000568191 SF3A3Q12874 501 aaKnown RBP eCLIP3.18□□□□□ -1.9
VPS35-207ENST00000568191 HLFQ16534 295 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 IZUMO4Q1ZYL8 232 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 ZACNQ401N2 412 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 ARL13AQ5H913 290 aaPredicted RBP3.18□□□□□ -1.9
VPS35-207ENST00000568191 PRAMEF19Q5SWL8 479 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 VWA5B1Q5TIE3 1220 aa3.18□□□□□ -1.9
VPS35-207ENST00000568191 Q6ZTC4 211 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms