RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SPSB3Q6PJ21 355 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 MDGA2Q7Z553 956 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 REXO5Q96IC2 774 aaKnown RBP5.02□□□□□ -1.61
VPS13C-208ENST00000559119 POLDIP3Q9BY77 421 aaKnown RBP5.02□□□□□ -1.61
VPS13C-208ENST00000559119 EPS8L2Q9H6S3 715 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 STARD7Q9NQZ5 370 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 ERRFI1Q9UJM3 462 aaPredicted RBP5.02□□□□□ -1.61
VPS13C-208ENST00000559119 FBXO4Q9UKT5 387 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 DTNAQ9Y4J8 743 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 SLC4A4Q9Y6R1 1079 aa5.02□□□□□ -1.61
VPS13C-208ENST00000559119 A0A087WYN8 130 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 LOC105369274A0A096LPK9 316 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 LOC102723532A0A0G2JNH3 316 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 M0QYT0 321 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 CER1O95813 267 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 HARSP12081 509 aaKnown RBP5.01□□□□□ -1.61
VPS13C-208ENST00000559119 FCGR1AP12314 374 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 TRAF2Q12933 501 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 ARL13AQ5H913 290 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-208ENST00000559119 FSCBQ5H9T9 825 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 HIBCHQ6NVY1 386 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-208ENST00000559119 CREB3L2Q70SY1 520 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 CCDC25Q86WR0 208 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 DGKHQ86XP1 1220 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 KLBQ86Z14 1044 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 OR4N4Q8N0Y3 316 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 MCRS1Q96EZ8 462 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 TBCBQ99426 244 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 B3GNT4Q9C0J1 378 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 ZNF556Q9HAH1 456 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 ZNF304Q9HCX3 659 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 PLEKHB1Q9UF11 243 aaPredicted RBP5.01□□□□□ -1.61
VPS13C-208ENST00000559119 SLC12A4Q9UP95 1085 aa5.01□□□□□ -1.61
VPS13C-208ENST00000559119 A0A1B0GUV1 79 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 SAC3D1A6NKF1 404 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 SMTNL1A8MU46 457 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 MCIDASD6RGH6 385 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 MS4A18H0YCH9 400 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 LIASO43766 372 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 GLP2RO95838 553 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 PEPDP12955 493 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 CHRNB2P17787 502 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 PDLIM4P50479 330 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 CLCN5P51795 746 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 ADPRHP54922 357 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 RPL15P61313 204 aaKnown RBP5□□□□□ -1.61
VPS13C-208ENST00000559119 PMS2P11Q13670 270 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 AAGABQ6PD74 315 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 C16orf82Q7Z2V1 217 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 TMPRSS12Q86WS5 348 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 DPP10Q8N608 796 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 KDM1BQ8NB78 822 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 WDR60Q8WVS4 1066 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 ADAMTS14Q8WXS8 1223 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 ZNF566Q969W8 418 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 RAB21Q9UL25 225 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 FAM50BQ9Y247 325 aa5□□□□□ -1.61
VPS13C-208ENST00000559119 I6L893 689 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-208ENST00000559119 VWA5AO00534 786 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 NTSR2O95665 410 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 ANXA6P08133 673 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 TNFSF8P32971 234 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 PMS2P54278 862 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 COASYQ13057 564 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 GRM4Q14833 912 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 OTUD3Q5T2D3 398 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-208ENST00000559119 C9orf57Q5W0N0 161 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 ARL6IP4Q66PJ3 421 aaKnown RBP4.99□□□□□ -1.61
VPS13C-208ENST00000559119 ZNF367Q7RTV3 350 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 TRABD2AQ86V40 505 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 RTP4Q96DX8 246 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 CCDC134Q9H6E4 229 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 NECTIN3Q9NQS3 549 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 TRPC5Q9UL62 973 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-208ENST00000559119 CEP83Q9Y592 693 aa4.99□□□□□ -1.61
VPS13C-208ENST00000559119 CYP3A7-CYP3A51PA0A087WV96 503 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 TBC1D3DA0A087WVF3 549 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 TBC1D3IA0A087WXS9 549 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 TBC1D3EA0A087X179 549 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 TBC1D3KA0A087X1G2 549 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 TBC1D3BA6NDS4 549 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 TBC1D3FA6NER0 549 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-208ENST00000559119 TBC1D3LB9A6J9 549 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 ZBTB11O95625 1053 aaPredicted RBP4.98□□□□□ -1.61
VPS13C-208ENST00000559119 PPP1R3DO95685 299 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 CYP3A4P08684 503 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 TBC1D3HP0C7X1 549 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 SLC5A1P13866 664 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 CYP3A7P24462 503 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 KLRC2P26717 231 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 FOXL2P58012 376 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 SEC61A1P61619 476 aaKnown RBP4.98□□□□□ -1.61
VPS13C-208ENST00000559119 KIF5AQ12840 1032 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 DUSP6Q16828 381 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 TDRD12Q587J7 1177 aaKnown RBP4.98□□□□□ -1.61
VPS13C-208ENST00000559119 TBC1D3GQ6DHY5 549 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 TBC1D3CQ6IPX1 549 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 Q6ZSV7 163 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 ARMC9Q7Z3E5 817 aa4.98□□□□□ -1.61
VPS13C-208ENST00000559119 TBC1D3Q8IZP1 549 aaPredicted RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms