RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 OR7D4Q8NG98 312 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 EXD1Q8NHP7 514 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 TRIM44Q96DX7 344 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-227ENST00000557269 CELF6Q96J87 481 aaKnown RBP13.17□□□□□ -0.3
SHMT2-227ENST00000557269 RNF157Q96PX1 679 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 WDR24Q96S15 920 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 ZNF670Q9BS34 389 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 FOXQ1Q9C009 403 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 RCOR3Q9P2K3 495 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-227ENST00000557269 GGA2Q9UJY4 613 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 NDRG2Q9UN36 371 aaKnown RBP13.17□□□□□ -0.3
SHMT2-227ENST00000557269 SLC27A6Q9Y2P4 619 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.17□□□□□ -0.3
SHMT2-227ENST00000557269 DOCK4Q8N1I0 1966 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 MIA3Q5JRA6 1907 aa13.17□□□□□ -0.3
SHMT2-227ENST00000557269 A0A0A0MRY4 1105 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 GOLGA6L9A6NEM1 432 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 MIF4GDA9UHW6 222 aaKnown RBP13.16□□□□□ -0.3
SHMT2-227ENST00000557269 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-227ENST00000557269 K7EQS6 105 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 FGF10O15520 208 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-227ENST00000557269 KIF5CO60282 957 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 RHOCP08134 193 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 PABPC1P11940 636 aaKnown RBP13.16□□□□□ -0.3
SHMT2-227ENST00000557269 TARSP26639 723 aaKnown RBP13.16□□□□□ -0.3
SHMT2-227ENST00000557269 ACVRL1P37023 503 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 ZNF135P52742 658 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-227ENST00000557269 RWDD2BP57060 319 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 AMPD2Q01433 879 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 FZD5Q13467 585 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 RPS6KA1Q15418 735 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 PITRM1Q5JRX3 1037 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 EMC10Q5UCC4 262 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 AFMIDQ63HM1 303 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 NCBP2-AS2Q69YL0 99 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 ZNF852Q6ZMS4 543 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 SETD3Q86TU7 594 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-227ENST00000557269 MAP7D3Q8IWC1 876 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 ARHGAP12Q8IWW6 846 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 CCDC33Q8N5R6 958 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 TERB1Q8NA31 727 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 SORCS1Q8WY21 1168 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 PSMB7Q99436 277 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 FEM1AQ9BSK4 669 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 SLC39A8Q9C0K1 460 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 EPHX3Q9H6B9 360 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 CATSPERBQ9H7T0 1116 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 TBC1D17Q9HA65 648 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 ZDHHC4Q9NPG8 344 aa13.16□□□□□ -0.3
SHMT2-227ENST00000557269 RBM12Q9NTZ6 932 aaKnown RBP13.16□□□□□ -0.3
SHMT2-227ENST00000557269 KIAA1522Q9P206 1035 aaPredicted RBP13.16□□□□□ -0.3
SHMT2-227ENST00000557269 hCG_1818297A0A087WSY0 165 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 KANSL1LA0AUZ9 987 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 ILVBLA1L0T0 632 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 TBC1D3BA6NDS4 549 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 MAN2B1O00754 1011 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 ATP1A1P05023 1023 aaKnown RBP13.15□□□□□ -0.3
SHMT2-227ENST00000557269 GLDCP23378 1020 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 GRIA2P42262 883 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 CTSOP43234 321 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-227ENST00000557269 MAPKAPK2P49137 400 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 PLK1P53350 603 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 GNG11P61952 73 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 GNA12Q03113 381 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 SLC10A2Q12908 348 aaPredicted RBP13.15□□□□□ -0.3
SHMT2-227ENST00000557269 CCINQ13939 588 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 PLEKHG6Q3KR16 790 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 C6orf118Q5T5N4 469 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 KAZNQ674X7 775 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 CCDC50Q8IVM0 306 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 UMODL1-AS1Q8N2C9 162 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 UBL4BQ8N7F7 174 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 PLD5Q8N7P1 536 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 MSANTD3Q96H12 275 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 SHDQ96IW2 340 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 HEMGNQ9BXL5 484 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 MUC3BQ9H195 1237 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 RETREG1Q9H6L5 497 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 LRRC19Q9H756 370 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 LTB4R2Q9NPC1 389 aa13.15□□□□□ -0.3
SHMT2-227ENST00000557269 FAM170BA6NMN3 283 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 ZNF487B1APH4 448 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 RASA4BC9J798 803 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 RASA4O43374 803 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 MFSD11O43934 449 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 SNAP91O60641 907 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 MAP3K6O95382 1288 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 APODP05090 189 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 CHRNB1P11230 501 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 ALADP13716 330 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 CXCR5P32302 372 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 SEC13P55735 322 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 DYNLT1P63172 113 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 GBE1Q04446 702 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 GRSF1Q12849 480 aaKnown RBP eCLIP13.14□□□□□ -0.31
SHMT2-227ENST00000557269 UBXN2BQ14CS0 331 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 PAFAH1B3Q15102 231 aaKnown RBP13.14□□□□□ -0.31
SHMT2-227ENST00000557269 TFDP3Q5H9I0 405 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 MBLAC2Q68D91 279 aa13.14□□□□□ -0.31
SHMT2-227ENST00000557269 CWF19L1Q69YN2 538 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms