RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 TTC31Q49AM3 519 aaPredicted RBP16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 C9orf64Q5T6V5 341 aa16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 DAB2IPQ5VWQ8 1189 aa16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 RNF219Q5W0B1 726 aaPredicted RBP16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 PPP1R2P3Q6NXS1 205 aa16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 STRADAQ7RTN6 431 aa16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 SETD3Q86TU7 594 aaPredicted RBP16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 APCDD1Q8J025 514 aa16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 C3orf20Q8ND61 904 aa16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 PCDHB18PQ96TA0 734 aa16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 METTL5Q9NRN9 209 aaKnown RBP16.52■□□□□ 0.24
CCDC88C-209ENST00000554872 NYNRINQ9P2P1 1898 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 A0A1B0GTH6 734 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 CXorf51AA0A1B0GTR3 108 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 MED19A0JLT2 244 aaPredicted RBP16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 DCDC2BA2VCK2 349 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 C2CD4BA6NLJ0 364 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 UPK3BL1B0FP48 263 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 C10orf142B7Z368 130 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 UPK3BL2E5RIL1 263 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 GOLGA8SH3BPF8 625 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 ATP9BO43861 1147 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 RNASEH1O60930 286 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 SIN3BO75182 1162 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 DNTTP04053 509 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 CALB1P05937 261 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 PDGFRAP16234 1089 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 MZF1P28698 734 aaPredicted RBP16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 IRAK1P51617 712 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 ZNF177Q13360 481 aaPredicted RBP16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 ELAVL3Q14576 367 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 C2CD6Q53TS8 623 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 ZNF783Q6ZMS7 281 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 MON1BQ7L1V2 547 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 IRF2BP2Q7Z5L9 587 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 C14orf80Q86SX3 495 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 CIR1Q86X95 450 aaPredicted RBP16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 ZNF366Q8N895 744 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 BAP1Q92560 729 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 CENPIQ92674 756 aaPredicted RBP16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 ERLEC1Q96DZ1 483 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 CFAP57Q96MR6 1250 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 FEM1AQ9BSK4 669 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 GPR174Q9BXC1 333 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 EDEM3Q9BZQ6 932 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 PABPC3Q9H361 631 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 SGK2Q9HBY8 427 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 PPARGC1AQ9UBK2 798 aaKnown RBP16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 PI4KAP42356 2102 aa16.51■□□□□ 0.23
CCDC88C-209ENST00000554872 ATXN2Q99700 1313 aaKnown RBP16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 TCRBV5S1A1TA0A578 114 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 TEX33O43247 280 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 GNSP15586 552 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 ENGP17813 658 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 SDC4P31431 198 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 NNMTP40261 264 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 CTSOP43234 321 aaPredicted RBP16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 GFPT1Q06210 699 aaPredicted RBP16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 FILIP1LQ4L180 1135 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 FIGNQ5HY92 759 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 PPM1JQ5JR12 505 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 LRRC31Q6UY01 552 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 OR52K2Q8NGK3 314 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 C1orf216Q8TAB5 229 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 SLC30A5Q8TAD4 765 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 FRS2Q8WU20 508 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 PTPRN2Q92932 1015 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 FAM131CQ96AQ9 280 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 AGPAT1Q99943 283 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 C11orf70Q9BRQ4 267 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 ZDHHC5Q9C0B5 715 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 TTYH3Q9C0H2 523 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 OSGEPQ9NPF4 335 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 ADAM22Q9P0K1 906 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 ZNF212Q9UDV6 495 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 ADAMTS1Q9UHI8 967 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 FZD4Q9ULV1 537 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 HS3ST2Q9Y278 367 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 GON4LQ3T8J9 2241 aa16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 CNOT1A5YKK6 2376 aaKnown RBP16.5■□□□□ 0.23
CCDC88C-209ENST00000554872 A0A1B0GTW7 788 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 SIGLEC16A6NMB1 481 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 C4orf47A7E2U8 309 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 TTC34A8MYJ7 566 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 E9PAM4 449 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 ALOX15BO15296 676 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 KRT3P12035 628 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 CSRP1P21291 193 aaKnown RBP16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 CST6Q15828 149 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 CCDC14Q49A88 953 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 MANEALQ5VSG8 457 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 FAM131BQ86XD5 332 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 DCAF4L2Q8NA75 395 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 RXFP2Q8WXD0 754 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 NTAN1Q96AB6 310 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 VCPIP1Q96JH7 1222 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 FAM129BQ96TA1 746 aa16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 C2orf49Q9BVC5 232 aaPredicted RBP16.49■□□□□ 0.23
CCDC88C-209ENST00000554872 BTBD1Q9H0C5 482 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms