RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 CD72P21854 359 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 CD70P32970 193 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 COPS2P61201 443 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 KDSRQ06136 332 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 MESP2Q0VG99 397 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 GRSF1Q12849 480 aaKnown RBP eCLIP17.58■□□□□ 0.41
LIG1-204ENST00000542460 LMAN2Q12907 356 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 MFSD7Q6UXD7 560 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 ZNF783Q6ZMS7 281 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 SPOCD1Q6ZMY3 1216 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 ANKS1BQ7Z6G8 1248 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 KIAA0907Q7Z7F0 614 aaPredicted RBP17.58■□□□□ 0.41
LIG1-204ENST00000542460 CCDC50Q8IVM0 306 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 SLC35F6Q8N357 371 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 C17orf53Q8N3J3 647 aaPredicted RBP17.58■□□□□ 0.41
LIG1-204ENST00000542460 LZTR1Q8N653 840 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 TERB1Q8NA31 727 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 PCDH19Q8TAB3 1148 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 LMLNQ96KR4 655 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 RNF157Q96PX1 679 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 NELL2Q99435 816 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 MAK16Q9BXY0 300 aaKnown RBP17.58■□□□□ 0.41
LIG1-204ENST00000542460 PRDM16Q9HAZ2 1276 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 NDFIP2Q9NV92 336 aa17.58■□□□□ 0.41
LIG1-204ENST00000542460 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.58■□□□□ 0.41
LIG1-204ENST00000542460 KANSL1LA0AUZ9 987 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 FAM86C2PA6NEL3 165 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 DCLK1O15075 740 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 CETN2P41208 172 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 CDKN2BP42772 138 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 PLK1P53350 603 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 DMC1Q14565 340 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 TAZQ16635 292 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 GEN1Q17RS7 908 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 TFDP3Q5H9I0 405 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 TMEM31Q5JXX7 168 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 RNF219Q5W0B1 726 aaPredicted RBP17.57■□□□□ 0.4
LIG1-204ENST00000542460 TMCO3Q6UWJ1 677 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 TRIM67Q6ZTA4 783 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 AHI1Q8N157 1196 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 UMODL1-AS1Q8N2C9 162 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 OR52K2Q8NGK3 314 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 WFIKKN2Q8TEU8 576 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 FEM1AQ9BSK4 669 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 TLR10Q9BXR5 811 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 COL4A3Q01955 1670 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 RAMP2O60895 175 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 PYGMP11217 842 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 CSKP41240 450 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 TNFRSF4P43489 277 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 DNA2P51530 1060 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 NDST2P52849 883 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 YBEYP58557 167 aaPredicted RBP17.57■□□□□ 0.4
LIG1-204ENST00000542460 GNG11P61952 73 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 GNA12Q03113 381 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 PLEKHG6Q3KR16 790 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 FSTL4Q6MZW2 842 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 PQLC3Q8N755 202 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.57■□□□□ 0.4
LIG1-204ENST00000542460 MUC3BQ9H195 1237 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 MAGEH1Q9H213 219 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 ETNK2Q9NVF9 386 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 RAPGEFL1Q9UHV5 662 aa17.57■□□□□ 0.4
LIG1-204ENST00000542460 TIMM44O43615 452 aa17.56■□□□□ 0.4
LIG1-204ENST00000542460 ZFXP17010 805 aaPredicted RBP17.56■□□□□ 0.4
LIG1-204ENST00000542460 MZF1P28698 734 aaPredicted RBP17.56■□□□□ 0.4
LIG1-204ENST00000542460 SERPINB6P35237 376 aa17.56■□□□□ 0.4
LIG1-204ENST00000542460 ETFBP38117 255 aa17.56■□□□□ 0.4
LIG1-204ENST00000542460 POLD3Q15054 466 aaPredicted RBP17.56■□□□□ 0.4
LIG1-204ENST00000542460 EIF4HQ15056 248 aaKnown RBP17.56■□□□□ 0.4
LIG1-204ENST00000542460 PPP2R5EQ16537 467 aa17.56■□□□□ 0.4
LIG1-204ENST00000542460 PITRM1Q5JRX3 1037 aa17.56■□□□□ 0.4
LIG1-204ENST00000542460 ADIPOR2Q86V24 386 aa17.56■□□□□ 0.4
LIG1-204ENST00000542460 ALG14Q96F25 216 aa17.56■□□□□ 0.4
LIG1-204ENST00000542460 LRFN3Q9BTN0 628 aa17.56■□□□□ 0.4
LIG1-204ENST00000542460 TBC1D17Q9HA65 648 aa17.56■□□□□ 0.4
LIG1-204ENST00000542460 LTB4R2Q9NPC1 389 aa17.56■□□□□ 0.4
LIG1-204ENST00000542460 VPS28Q9UK41 221 aa17.56■□□□□ 0.4
LIG1-204ENST00000542460 INTS6Q9UL03 887 aaKnown RBP17.56■□□□□ 0.4
LIG1-204ENST00000542460 NDRG2Q9UN36 371 aaKnown RBP17.56■□□□□ 0.4
LIG1-204ENST00000542460 EFR3BQ9Y2G0 817 aa17.56■□□□□ 0.4
LIG1-204ENST00000542460 OR51B4Q9Y5P0 310 aa17.56■□□□□ 0.4
LIG1-204ENST00000542460 MYOFQ9NZM1 2061 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 hCG_1818297A0A087WSY0 165 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 A0A0D9SEW6 157 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 PRRT4C9JH25 899 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 STK25O00506 426 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 ENC1O14682 589 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 EGFP01133 1207 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 KRT10P13645 584 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 POLR2EP19388 210 aaKnown RBP17.55■□□□□ 0.4
LIG1-204ENST00000542460 PTPN7P35236 360 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 CCINQ13939 588 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 TFDP2Q14188 446 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 PAFAH1B3Q15102 231 aaKnown RBP17.55■□□□□ 0.4
LIG1-204ENST00000542460 PARP15Q460N3 678 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 FUT11Q495W5 492 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 FBXO43Q4G163 708 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 DGKKQ5KSL6 1271 aa17.55■□□□□ 0.4
LIG1-204ENST00000542460 DCAF12L1Q5VU92 463 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms