RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 VWA5B1Q5TIE3 1220 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 TPTE2Q6XPS3 522 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 RBM44Q6ZP01 1051 aaKnown RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 KCPQ6ZWJ8 1503 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 DGLUCYQ7Z3D6 616 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 DHFR2Q86XF0 187 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ARMC8Q8IUR7 673 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 NAT16Q8N8M0 369 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 OR51D1Q8NGF3 324 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 MCFD2Q8NI22 146 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 SLC22A8Q8TCC7 542 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 GLG1Q92896 1179 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 TAMM41Q96BW9 452 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 C12orf43Q96C57 262 aaKnown RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 RNPC3Q96LT9 517 aaKnown RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 CITED4Q96RK1 184 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 TWNKQ96RR1 684 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 CALN1Q9BXU9 219 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 TRIM9Q9C026 710 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 OR51E2Q9H255 320 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ENTPD7Q9NQZ7 604 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 SH3GLB2Q9NR46 395 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 C19orf12Q9NSK7 152 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 FAM105AQ9NUU6 356 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 C14orf105Q9NVL8 296 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 INTS10Q9NVR2 710 aaKnown RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 PAG1Q9NWQ8 432 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 WWOXQ9NZC7 414 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 NPAP1Q9NZP6 1156 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 PAK5Q9P286 719 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 KCNN3Q9UGI6 736 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 SEPT9Q9UHD8 586 aaPredicted RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 POLG2Q9UHN1 485 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 PNMA3Q9UL41 463 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 C14orf166Q9Y224 244 aaKnown RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 NDUFAF1Q9Y375 327 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 FARP1Q9Y4F1 1045 aaPredicted RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 FKBP7Q9Y680 259 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 A0A0A6YYK5 440 aaPredicted RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 FAM240BA0A1B0GVZ2 78 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 EME2A4GXA9 379 aaPredicted RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 ZNF701M0R085 212 aaPredicted RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 AGRPO00253 132 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ZSCAN9O15535 394 aaPredicted RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 TIMM44O43615 452 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 TRAPPC3O43617 180 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 DNAJB6O75190 326 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ANGPTL1O95841 491 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 MPOP05164 745 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 NFICP08651 508 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 OR52Z1P0C646 297 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 C7P10643 843 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ATP5F1P24539 256 aaPredicted RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 CERS1P27544 350 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 PRKCIP41743 596 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ALDH1A3P47895 512 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ALDH9A1P49189 494 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 LIG4P49917 911 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 PRKCQQ04759 706 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 GRIK3Q13003 919 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ADAM9Q13443 819 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 VEPH1Q14D04 833 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 UAP1L1Q3KQV9 507 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 PLEKHN1Q494U1 663 aaPredicted RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 IDNKQ5T6J7 187 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 THEMIS2Q5TEJ8 643 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 COMTD1Q86VU5 262 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ZNF677Q86XU0 584 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ZDHHC13Q8IUH4 622 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 BRSK2Q8IWQ3 736 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 SYTL1Q8IYJ3 562 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 CPXCR1Q8N123 301 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 GALNT4Q8N4A0 578 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 KDM1BQ8NB78 822 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 TRPV3Q8NET8 790 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ASAP3Q8TDY4 903 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ANKRD49Q8WVL7 239 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 AP2M1Q96CW1 435 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 CAPNS2Q96L46 248 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ACCSQ96QU6 501 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 TCF12Q99081 682 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 ZNF717Q9BY31 904 aaPredicted RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 OSBPL3Q9H4L5 887 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 MRPL44Q9H9J2 332 aaKnown RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 CPNE5Q9HCH3 593 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 TMEM184CQ9NVA4 438 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 CLN6Q9NWW5 311 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 CMTM6Q9NX76 183 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.64□□□□□ -1.83
USP53-205ENST00000509769 ABCD2Q9UBJ2 740 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 DCTN4Q9UJW0 460 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 RPS6KA6Q9UK32 745 aa3.64□□□□□ -1.83
USP53-205ENST00000509769 BCLAF3A2AJT9 711 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 RNF212BA8MTL3 300 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 HSBP1L1C9JCN9 74 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 PSMD9O00233 223 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 PLD2O14939 933 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 POLR1CO15160 346 aaPredicted RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 SLC16A3O15427 465 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 TLR2O60603 784 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms