RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 VPS39Q96JC1 886 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 CDCA3Q99618 268 aaPredicted RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 SLC28A3Q9HAS3 691 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 TMBIM4Q9HC24 238 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 ATP13A1Q9HD20 1204 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 VPS9D1Q9Y2B5 631 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 DOCK3Q8IZD9 2030 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 CSPG5O95196 566 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 CD48P09326 243 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 MLLT6P55198 1093 aaPredicted RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 DEFB103AP81534 67 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 SLC29A2Q14542 456 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 KYNUQ16719 465 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 CA9Q16790 459 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 TAF1BQ53T94 588 aaPredicted RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 ZNF783Q6ZMS7 281 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 SDCCAG8Q86SQ7 713 aaPredicted RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 FBXO36Q8NEA4 188 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 USP33Q8TEY7 942 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 UCMAQ8WVF2 138 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 CABS1Q96KC9 395 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 CWH43Q9H720 699 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 MSI1O43347 362 aaKnown RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 RPL17P18621 184 aaKnown RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 CORO1AP31146 461 aaKnown RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 PBX3P40426 434 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 HADHAP40939 763 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 SESN2P58004 480 aaPredicted RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 AUHQ13825 339 aaKnown RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 TEX44Q53QW1 395 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 SH3PXD2AQ5TCZ1 1133 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 C3orf62Q6ZUJ4 267 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 GPRIN1Q7Z2K8 1008 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 KLHL23Q8NBE8 558 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 SCG3Q8WXD2 468 aaKnown RBP8.57□□□□□ -1.04
USP54-215ENST00000497106 NT5C3BQ969T7 300 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 P2RY11Q96G91 374 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 C9orf72Q96LT7 481 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 FAM167BQ9BTA0 163 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 ZFATQ9P243 1243 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 VPS28Q9UK41 221 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 CHMP2BQ9UQN3 213 aa8.57□□□□□ -1.04
USP54-215ENST00000497106 WDR27A2RRH5 827 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 RASA4BC9J798 803 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 ALOX15BO15296 676 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 RASA4O43374 803 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 SERPINF2P08697 491 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 CCNB1P14635 433 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 CCT5P48643 541 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 SULT2A1Q06520 285 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 IL10RBQ08334 325 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 CPNE8Q86YQ8 564 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 DENND1CQ8IV53 801 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 TMEM130Q8N3G9 435 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 PTCD2Q8WV60 388 aaKnown RBP8.56□□□□□ -1.04
USP54-215ENST00000497106 PRCCQ92733 491 aaPredicted RBP8.56□□□□□ -1.04
USP54-215ENST00000497106 CELF6Q96J87 481 aaKnown RBP8.56□□□□□ -1.04
USP54-215ENST00000497106 PIWIL1Q96J94 861 aaKnown RBP8.56□□□□□ -1.04
USP54-215ENST00000497106 B3GALT6Q96L58 329 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 AGAP3Q96P47 875 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 GBA3Q9H227 469 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 TLE6Q9H808 572 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 SCUBE2Q9NQ36 999 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 NINJ2Q9NZG7 142 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 DTLQ9NZJ0 730 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 TLK1Q9UKI8 766 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 MRPS23Q9Y3D9 190 aaKnown RBP8.56□□□□□ -1.04
USP54-215ENST00000497106 HHLA1C9JL84 531 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 MATN3O15232 486 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 TCF4P15884 667 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 GNGT1P63211 74 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 RNASEH2BQ5TBB1 312 aaKnown RBP8.56□□□□□ -1.04
USP54-215ENST00000497106 KIAA0319Q5VV43 1072 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 SETD3Q86TU7 594 aaPredicted RBP8.56□□□□□ -1.04
USP54-215ENST00000497106 EGFL6Q8IUX8 553 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 ANKMY2Q8IV38 441 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 IPMKQ8NFU5 416 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 PSMG2Q969U7 264 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 PGM2Q96G03 612 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 TBL1YQ9BQ87 522 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 TMEM109Q9BVC6 243 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 ADGRE3Q9BY15 652 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 IL22Q9GZX6 179 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 ETNK1Q9HBU6 452 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 RXFP1Q9HBX9 757 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 PRM3Q9NNZ6 103 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 TMEM248Q9NWD8 314 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 COMMD10Q9Y6G5 202 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 TRIM43BA6NCK2 446 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 CCDC85CA6NKD9 419 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 GALNT2Q10471 571 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 TXNRD3NBQ6F5E7 133 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 MFN1Q8IWA4 741 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 PPM1NQ8N819 430 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 ARHGEF2Q92974 986 aaKnown RBP8.56□□□□□ -1.04
USP54-215ENST00000497106 TRIM43Q96BQ3 446 aaPredicted RBP8.56□□□□□ -1.04
USP54-215ENST00000497106 SGSM3Q96HU1 749 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 KLHL5Q96PQ7 755 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 NUDT5Q9UKK9 219 aa8.56□□□□□ -1.04
USP54-215ENST00000497106 SPRP35270 261 aaPredicted RBP8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms