RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 GPR149Q86SP6 731 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 PTGR2Q8N8N7 351 aaPredicted RBP4.43□□□□□ -1.7
PTCD3-216ENST00000487043 KCNH5Q8NCM2 988 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 TBC1D22AQ8WUA7 517 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 ARRDC3Q96B67 414 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 RSPRY1Q96DX4 576 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 APOPT1Q96IL0 206 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 PRR25Q96S07 402 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 SAP30LQ9HAJ7 183 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 IL21RQ9HBE5 538 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 KCNK9Q9NPC2 374 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 KRT84Q9NSB2 600 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 TBCCD1Q9NVR7 557 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 MGAT4CQ9UBM8 478 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 NUDCQ9Y266 331 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 MAP2P11137 1827 aaKnown RBP4.43□□□□□ -1.7
PTCD3-216ENST00000487043 OVOS2A0A0J9YW53 1432 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 OVOS2Q6IE36 1432 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 ADGRA2Q96PE1 1338 aa4.43□□□□□ -1.7
PTCD3-216ENST00000487043 SBNO1A3KN83 1393 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 FSD2A1L4K1 749 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 PGPEP1LA6NFU8 196 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 MBD3L5A6NJ08 208 aaPredicted RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 NKX2-8O15522 239 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 HNRNPRO43390 633 aaKnown RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 LPXNO60711 386 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 USO1O60763 962 aaKnown RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 ZBED4O75132 1171 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 WEE2P0C1S8 567 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 NR4A1P22736 598 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 ADRA1DP25100 572 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 CXCR5P32302 372 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 BMPR1AP36894 532 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 IGHMBP2P38935 993 aaKnown RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 PAFAH1B1P43034 410 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 PCP4P48539 62 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 CCT4P50991 539 aaKnown RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 TPTEP56180 551 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 SUMO2P61956 95 aaKnown RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 E2F1Q01094 437 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 GUCY1B3Q02153 619 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 KLF10Q13118 480 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 RRS1Q15050 365 aaKnown RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 PRKD1Q15139 912 aaPredicted RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 BAK1Q16611 211 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 CYP1B1Q16678 543 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 FAM69AQ5T7M9 428 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 ZNF618Q5T7W0 954 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 LIPMQ5VYY2 423 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 ACSM6Q6P461 480 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 VWA1Q6PCB0 445 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 KIAA1324Q6UXG2 1013 aaKnown RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 KRBA2Q6ZNG9 492 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 NEK10Q6ZWH5 1172 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 FASTKD5Q7L8L6 764 aaKnown RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 ARMC8Q8IUR7 673 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 GALNT4Q8N4A0 578 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 ZNF276Q8N554 614 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 SIRT6Q8N6T7 355 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 SLC2A12Q8TD20 617 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 ADAMTS18Q8TE60 1221 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 CLEC4CQ8WTT0 213 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 CTHRC1Q96CG8 243 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 FBXL20Q96IG2 436 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 PGBD1Q96JS3 809 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 PPP1R10Q96QC0 940 aaKnown RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 SDF4Q9BRK5 362 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 CLPBQ9H078 707 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 STN1Q9H668 368 aaKnown RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 PDE11AQ9HCR9 933 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 TLR8Q9NR97 1041 aaKnown RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 ING1Q9UK53 422 aaPredicted RBP4.42□□□□□ -1.7
PTCD3-216ENST00000487043 CAMK2AQ9UQM7 478 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 GDAQ9Y2T3 454 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 KAT6BQ8WYB5 2073 aa4.42□□□□□ -1.7
PTCD3-216ENST00000487043 PIK3C2AO00443 1686 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 USP54Q70EL1 1684 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 KIF24Q5T7B8 1368 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 BLMP54132 1417 aaPredicted RBP4.41□□□□□ -1.7
PTCD3-216ENST00000487043 SMG6Q86US8 1419 aaKnown RBP4.41□□□□□ -1.7
PTCD3-216ENST00000487043 VWC2LB2RUY7 222 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 F5H0A9 414 aaPredicted RBP4.41□□□□□ -1.7
PTCD3-216ENST00000487043 K7ENM7 598 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 YY2O15391 372 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 TOM1O60784 492 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 ONECUT2O95948 504 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 GCP02774 474 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 ITGAMP11215 1152 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 ACP5P13686 325 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 PRKCHP24723 683 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 PNPLA4P41247 253 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 POLD2P49005 469 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 CCR9P51686 369 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 NAP1L1P55209 391 aaKnown RBP4.41□□□□□ -1.7
PTCD3-216ENST00000487043 TAS2R50P59544 299 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 DNASE1L3Q13609 305 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 FAM187BQ17R55 369 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 NRN1LQ496H8 165 aa4.41□□□□□ -1.7
PTCD3-216ENST00000487043 TIGD2Q4W5G0 525 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms