RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 NLRP14Q86W24 1093 aa16.34■□□□□ 0.21
UPF3A-208ENST00000484246 OR52K2Q8NGK3 314 aa16.34■□□□□ 0.21
UPF3A-208ENST00000484246 GAB3Q8WWW8 586 aa16.34■□□□□ 0.21
UPF3A-208ENST00000484246 CTNNBL1Q8WYA6 563 aaPredicted RBP16.34■□□□□ 0.21
UPF3A-208ENST00000484246 TBC1D31Q96DN5 1066 aa16.34■□□□□ 0.21
UPF3A-208ENST00000484246 MRGPRX3Q96LB0 322 aa16.34■□□□□ 0.21
UPF3A-208ENST00000484246 FEM1AQ9BSK4 669 aa16.34■□□□□ 0.21
UPF3A-208ENST00000484246 NUP85Q9BW27 656 aa16.34■□□□□ 0.21
UPF3A-208ENST00000484246 FBRSQ9HAH7 460 aa16.34■□□□□ 0.21
UPF3A-208ENST00000484246 IP6K2Q9UHH9 426 aa16.34■□□□□ 0.21
UPF3A-208ENST00000484246 INTUQ9ULD6 942 aa16.34■□□□□ 0.21
UPF3A-208ENST00000484246 PLA2G4CQ9UP65 541 aa16.34■□□□□ 0.21
UPF3A-208ENST00000484246 WDFY4Q6ZS81 3184 aa16.33■□□□□ 0.21
UPF3A-208ENST00000484246 TCRBV21S2A2A0A5A6 115 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 ILVBLA1L0T0 632 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 FAM72CH0Y354 149 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 LCA5LO95447 670 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 MZF1P28698 734 aaPredicted RBP16.33■□□□□ 0.2
UPF3A-208ENST00000484246 MIPP30301 263 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 MAPKAPK2P49137 400 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 ZNF135P52742 658 aaPredicted RBP16.33■□□□□ 0.2
UPF3A-208ENST00000484246 CAMK2GQ13555 558 aaPredicted RBP16.33■□□□□ 0.2
UPF3A-208ENST00000484246 TCEAL1Q15170 157 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 FAM72AQ5TYM5 149 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 ANO7Q6IWH7 933 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 FAM72DQ6L9T8 149 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 KIAA1211LQ6NV74 962 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.33■□□□□ 0.2
UPF3A-208ENST00000484246 FAM72BQ86X60 149 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 CCDC170Q8IYT3 715 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 APCDD1Q8J025 514 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 DCAF4L2Q8NA75 395 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 CYB5D2Q8WUJ1 264 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 NKD2Q969F2 451 aaPredicted RBP16.33■□□□□ 0.2
UPF3A-208ENST00000484246 PEBP4Q96S96 227 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 EPAS1Q99814 870 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 TMEM248Q9NWD8 314 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 MPP6Q9NZW5 540 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 IMPACTQ9P2X3 320 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 ANAPC7Q9UJX3 599 aa16.33■□□□□ 0.2
UPF3A-208ENST00000484246 WASH4PA8MWX3 477 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 MTA2O94776 668 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 RHOCP08134 193 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 GABRG2P18507 467 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 WASP42768 502 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 ECT2LQ008S8 904 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 FNDC3BQ53EP0 1204 aaKnown RBP16.32■□□□□ 0.2
UPF3A-208ENST00000484246 HEATR6Q6AI08 1181 aaKnown RBP16.32■□□□□ 0.2
UPF3A-208ENST00000484246 SCYL2Q6P3W7 929 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 METTL3Q86U44 580 aaKnown RBP16.32■□□□□ 0.2
UPF3A-208ENST00000484246 C11orf74Q86VG3 221 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 SUMF1Q8NBK3 374 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 ZNF564Q8TBZ8 553 aaPredicted RBP16.32■□□□□ 0.2
UPF3A-208ENST00000484246 PHOX2BQ99453 314 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 SNRNP25Q9BV90 132 aaKnown RBP16.32■□□□□ 0.2
UPF3A-208ENST00000484246 PACSIN1Q9BY11 444 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 SPTLC3Q9NUV7 552 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 USP18Q9UMW8 372 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 AP4E1Q9UPM8 1137 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 ERVW-1Q9UQF0 538 aa16.32■□□□□ 0.2
UPF3A-208ENST00000484246 PRR23AA6NEV1 266 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 WASH3PC4AMC7 463 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 MYO1FO00160 1098 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 FGF10O15520 208 aaPredicted RBP16.31■□□□□ 0.2
UPF3A-208ENST00000484246 HRO43593 1189 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 PRPSAP2O60256 369 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 SYNCRIPO60506 623 aaKnown RBP16.31■□□□□ 0.2
UPF3A-208ENST00000484246 SRGAP2O75044 1071 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 OR1E1P30953 314 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 MAN1A1P33908 653 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 ETFBP38117 255 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 PXNP49023 591 aaPredicted RBP16.31■□□□□ 0.2
UPF3A-208ENST00000484246 HNRNPA1L2Q32P51 320 aaKnown RBP16.31■□□□□ 0.2
UPF3A-208ENST00000484246 ERMARDQ5T6L9 678 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 TFAP2DQ7Z6R9 452 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 RTL3Q8N8U3 475 aaKnown RBP16.31■□□□□ 0.2
UPF3A-208ENST00000484246 TEKT4Q8WW24 435 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 RFFLQ8WZ73 363 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 MRGPRX1Q96LB2 322 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 PSMB7Q99436 277 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 C2orf49Q9BVC5 232 aaPredicted RBP16.31■□□□□ 0.2
UPF3A-208ENST00000484246 HS3ST2Q9Y278 367 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 RAD54BQ9Y620 910 aa16.31■□□□□ 0.2
UPF3A-208ENST00000484246 ZBTB24O43167 697 aaPredicted RBP16.3■□□□□ 0.2
UPF3A-208ENST00000484246 ATP9BO43861 1147 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 RPP40O75818 363 aaKnown RBP16.3■□□□□ 0.2
UPF3A-208ENST00000484246 LMNAP02545 664 aaKnown RBP16.3■□□□□ 0.2
UPF3A-208ENST00000484246 NDUFV2P19404 249 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 P2RY2P41231 377 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 CTSOP43234 321 aaPredicted RBP16.3■□□□□ 0.2
UPF3A-208ENST00000484246 COPAP53621 1224 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 ST8SIA6P61647 398 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 SLC25A11Q02978 314 aaKnown RBP16.3■□□□□ 0.2
UPF3A-208ENST00000484246 DPYSL2Q16555 572 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 USP39Q53GS9 565 aaKnown RBP16.3■□□□□ 0.2
UPF3A-208ENST00000484246 BOLA3Q53S33 107 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 RNF219Q5W0B1 726 aaPredicted RBP16.3■□□□□ 0.2
UPF3A-208ENST00000484246 TMTC1Q8IUR5 882 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 RHOT2Q8IXI1 618 aa16.3■□□□□ 0.2
UPF3A-208ENST00000484246 PYROXD2Q8N2H3 581 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms