RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 HMX1Q9NP08 348 aaPredicted RBP12.5□□□□□ -0.41
PTPRF-212ENST00000477970 PCDHB8Q9UN66 801 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 CASTOR2A6NHX0 329 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 FGF10O15520 208 aaPredicted RBP12.5□□□□□ -0.41
PTPRF-212ENST00000477970 GSRP00390 522 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 ALDOAP04075 364 aaKnown RBP12.5□□□□□ -0.41
PTPRF-212ENST00000477970 CD68P34810 354 aaPredicted RBP12.5□□□□□ -0.41
PTPRF-212ENST00000477970 LPIN1Q14693 890 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 TBCCQ15814 346 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 MANEALQ5VSG8 457 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 BSPRYQ5W0U4 402 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 TAC4Q86UU9 113 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 LZTR1Q8N653 840 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 ARMC2Q8NEN0 867 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 TEKT5Q96M29 485 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 TKTL2Q9H0I9 626 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 UNC93B1Q9H1C4 597 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 PCMTD2Q9NV79 361 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 OR12D3Q9UGF7 316 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 HAUS5O94927 633 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 ITGA2BP08514 1039 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 CCNCP24863 283 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 TARSP26639 723 aaKnown RBP12.5□□□□□ -0.41
PTPRF-212ENST00000477970 CACNB2Q08289 660 aaPredicted RBP12.5□□□□□ -0.41
PTPRF-212ENST00000477970 BST1Q10588 318 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 WASHC2DQ5SRD0 308 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 MROH9Q5TGP6 573 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 FAM43BQ6ZT52 329 aaPredicted RBP12.5□□□□□ -0.41
PTPRF-212ENST00000477970 NUDCD3Q8IVD9 361 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 CCDC33Q8N5R6 958 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 TRIM56Q9BRZ2 755 aaKnown RBP12.5□□□□□ -0.41
PTPRF-212ENST00000477970 SMOC2Q9H3U7 446 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 ABCC13Q9NSE7 274 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 THAP1Q9NVV9 213 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 BFARQ9NZS9 450 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 HEY2Q9UBP5 337 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 HAO1Q9UJM8 370 aa12.5□□□□□ -0.41
PTPRF-212ENST00000477970 SYNJ2BP-COX16A0A087WUM0 186 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 IRAK2O43187 625 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 CABYRO75952 493 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 AMHP03971 560 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 CTSHP09668 335 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 DNAJB1P25685 340 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 CD52P31358 61 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 HADHAP40939 763 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 CCNG1P51959 295 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 CSE1LP55060 971 aaKnown RBP12.49□□□□□ -0.41
PTPRF-212ENST00000477970 ARTNQ5T4W7 220 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 LINC00523Q86TU6 105 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 KIF2BQ8N4N8 673 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.49□□□□□ -0.41
PTPRF-212ENST00000477970 DQX1Q8TE96 717 aaKnown RBP12.49□□□□□ -0.41
PTPRF-212ENST00000477970 FATE1Q969F0 183 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 THOC1Q96FV9 657 aaKnown RBP12.49□□□□□ -0.41
PTPRF-212ENST00000477970 PAAF1Q9BRP4 392 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 MLPHQ9BV36 600 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-212ENST00000477970 IL22Q9GZX6 179 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 FAM96AQ9H5X1 160 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 NSMCE4AQ9NXX6 385 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 COX16Q9P0S2 106 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 CACNG4Q9UBN1 327 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 BAIAP2L1Q9UHR4 511 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 EMCNQ9ULC0 261 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 OGDHLQ9ULD0 1010 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 VANGL2Q9ULK5 521 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 TRIM33Q9UPN9 1127 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 SORCS3Q9UPU3 1222 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 TIMM13Q9Y5L4 95 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-212ENST00000477970 NR2E3Q9Y5X4 410 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 MYO16Q9Y6X6 1858 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 TNFRSF10BO14763 440 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 CCDC22O60826 627 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 LRIG2O94898 1065 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 PGK1P00558 417 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 CALB2P22676 271 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 THPOP40225 353 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 CSRP3P50461 194 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 CDK7P50613 346 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 SESN2P58004 480 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-212ENST00000477970 OVGP1Q12889 678 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 PPP2R5DQ14738 602 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 CASC4Q6P4E1 433 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 C4orf50Q6ZRC1 276 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 LCA5Q86VQ0 697 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 RASSF3Q86WH2 238 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 LRRC49Q8IUZ0 686 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 ANKRD27Q96NW4 1050 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 RBBP8Q99708 897 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 SEPT10Q9P0V9 454 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 SOX13Q9UN79 622 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 NUMBLQ9Y6R0 609 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 ZCWPW2A0A1B0GU75 182 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 WASH4PA8MWX3 477 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 ZBTB24O43167 697 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-212ENST00000477970 PLIN3O60664 434 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 ASGR1P07306 291 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 TSPY1Q01534 308 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 PDE1CQ14123 709 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-212ENST00000477970 CHI3L2Q15782 390 aa12.49□□□□□ -0.41
PTPRF-212ENST00000477970 CCDC153Q494R4 210 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 150.5 ms