RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 FAXCQ5TGI0 409 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 ITPRIPL1Q6GPH6 555 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 TIGD7Q6NT04 549 aaPredicted RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 ZNF567Q8N184 647 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 OR2W6PQ8NHA6 318 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 MRPS31Q92665 395 aaKnown RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 IGSF8Q969P0 613 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 ZFRQ96KR1 1074 aaKnown RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 RPRD1AQ96P16 312 aaPredicted RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 SERPINB12Q96P63 405 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 GCNAQ96QF7 691 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 TGS1Q96RS0 853 aaKnown RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 SLC39A8Q9C0K1 460 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 RNF38Q9H0F5 515 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 GBA3Q9H227 469 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 NOL6Q9H6R4 1146 aaKnown RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 ETNK1Q9HBU6 452 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 XAB2Q9HCS7 855 aaKnown RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 NDFIP2Q9NV92 336 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 DNAJC17Q9NVM6 304 aaKnown RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 MPP6Q9NZW5 540 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 SEPT10Q9P0V9 454 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 KLHL8Q9P2G9 620 aaPredicted RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 STOML2Q9UJZ1 356 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 NR2E3Q9Y5X4 410 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 MTCL1Q9Y4B5 1905 aaKnown RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 ATG2AQ2TAZ0 1938 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 ERI2A8K979 691 aaKnown RBP9.61□□□□□ -0.87
VPS52-216ENST00000471309 GRXCR1A8MXD5 290 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 E7EVH7 732 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 GOLGA8MH3BSY2 632 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 CNTN5O94779 1100 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 ACSL3O95573 720 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 SHBGP04278 402 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 IVLP07476 585 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 APRTP07741 180 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 POU2F2P09086 479 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 MYZAPP0CAP1 466 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 MBL2P11226 248 aaPredicted RBP9.61□□□□□ -0.87
VPS52-216ENST00000471309 MLNP12872 115 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 MYOGP15173 224 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 GABRR2P28476 465 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 SLC6A4P31645 630 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 MAGEA3P43357 314 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 EPHA5P54756 1037 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 ERVK-21P61565 698 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 FASTKD3Q14CZ7 662 aaKnown RBP9.61□□□□□ -0.87
VPS52-216ENST00000471309 SHHQ15465 462 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 KYNUQ16719 465 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 ANO4Q32M45 955 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 KRT71Q3SY84 523 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 CCDC38Q502W7 563 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 TEX44Q53QW1 395 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 RABGAP1LQ5R372 815 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 FNBP1LQ5T0N5 605 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 ADGRF1Q5T601 910 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 PRPF38BQ5VTL8 546 aaKnown RBP9.61□□□□□ -0.87
VPS52-216ENST00000471309 TTC39BQ5VTQ0 682 aaPredicted RBP9.61□□□□□ -0.87
VPS52-216ENST00000471309 FAM109BQ6ICB4 259 aaPredicted RBP9.61□□□□□ -0.87
VPS52-216ENST00000471309 GAREM2Q75VX8 874 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 ZNF534Q76KX8 674 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 SPRED2Q7Z698 418 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 TFAP2DQ7Z6R9 452 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 ZBED8Q8IZ13 594 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 ATP11CQ8NB49 1132 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 ZSCAN18Q8TBC5 510 aaPredicted RBP9.61□□□□□ -0.87
VPS52-216ENST00000471309 DEPDC1BQ8WUY9 529 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 C9orf72Q96LT7 481 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 TEKT5Q96M29 485 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 PRICKLE1Q96MT3 831 aaPredicted RBP9.61□□□□□ -0.87
VPS52-216ENST00000471309 IL12RB2Q99665 862 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 DDX50Q9BQ39 737 aaKnown RBP9.61□□□□□ -0.87
VPS52-216ENST00000471309 CEP41Q9BYV8 373 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 TMBIM4Q9HC24 238 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 TRPC7Q9HCX4 862 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 MAN1C1Q9NR34 630 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 ASAH2Q9NR71 780 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 RSPH14Q9UHP6 348 aa9.61□□□□□ -0.87
VPS52-216ENST00000471309 A0A087WUV0 522 aaPredicted RBP9.6□□□□□ -0.87
VPS52-216ENST00000471309 GOLGA6L7A0A1B0GV03 622 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 ARHGAP42A6NI28 874 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 SOBPA7XYQ1 873 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 HMGB1P1B2RPK0 211 aaPredicted RBP9.6□□□□□ -0.87
VPS52-216ENST00000471309 RASA4BC9J798 803 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 H3BNC9 293 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 MATN3O15232 486 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 RASA4O43374 803 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 RAMP2O60895 175 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 CLASP2O75122 1294 aaKnown RBP9.6□□□□□ -0.87
VPS52-216ENST00000471309 TCEA3O75764 348 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 SUN1O94901 812 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 KLKB1P03952 638 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 HNRNPA1P09651 372 aaKnown RBP eCLIP9.6□□□□□ -0.87
VPS52-216ENST00000471309 CCNB1P14635 433 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 NFKB1P19838 968 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 PSMB4P28070 264 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 PHBP35232 272 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 IRS1P35568 1242 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 IFNAR2P48551 515 aa9.6□□□□□ -0.87
VPS52-216ENST00000471309 PAPOLAP51003 745 aaKnown RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 167.7 ms