RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 BIRC5O15392 142 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 GLRA3O75311 464 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 ALDH1A1P00352 501 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 LMNAP02545 664 aaKnown RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 THP07101 528 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 T-ENOLP0DO92 83 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 CALB2P22676 271 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 PSMB4P28070 264 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 NDUFV1P49821 464 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 PSMD7P51665 324 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 AIF1P55008 147 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 CRADDP78560 199 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 WASHC2DQ5SRD0 308 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 KYAT3Q6YP21 454 aaKnown RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 MARK2Q7KZI7 788 aaKnown RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 RASSF3Q86WH2 238 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 ARID3BQ8IVW6 561 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 DNAAF3Q8N9W5 541 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 ZFAND2BQ8WV99 257 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 RSPH1Q8WYR4 309 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 RNF34Q969K3 372 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 SLC7A6OSQ96CW6 309 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 OXNAD1Q96HP4 312 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 MAELQ96JY0 434 aaKnown RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 ZIC5Q96T25 663 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 SLC9A7Q96T83 725 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 GAD1Q99259 594 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 TRIM56Q9BRZ2 755 aaKnown RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 MECRQ9BV79 373 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 CEP41Q9BYV8 373 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 BFARQ9NZS9 450 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 PPARGC1AQ9UBK2 798 aaKnown RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 GABRQQ9UN88 632 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 RPL26L1Q9UNX3 145 aaKnown RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 USP3Q9Y6I4 520 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 FCHO1O14526 889 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 TRAFD1O14545 582 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 NCAM2O15394 837 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 MTSS1O43312 755 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 DNAJC6O75061 913 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 TPPPO94811 219 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 C1QAP02745 245 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 NCAM1P13591 858 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 ELNP15502 786 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 ENPP1P22413 925 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 ADRA1BP35368 520 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 ADAM17P78536 824 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 PRKCZQ05513 592 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 LRP8Q14114 963 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 TIFABQ6ZNK6 161 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 CLEC20AQ6ZU45 233 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 FAM13CQ8NE31 585 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 NUDCD1Q96RS6 583 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 SLC39A3Q9BRY0 314 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 RRN3Q9NYV6 651 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 MOCS1Q9NZB8 636 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 WDR37Q9Y2I8 494 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 DOCK3Q8IZD9 2030 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 FAM237BA0A1B0GVD1 139 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 F9P00740 461 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 BPGMP07738 259 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 DLDP09622 509 aaKnown RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 MX2P20592 715 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 PCSK1P29120 753 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 OXCT1P55809 520 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 USP46P62068 366 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 PITX1P78337 314 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 PAFAH1B3Q15102 231 aaKnown RBP9.87□□□□□ -0.83
COL6A3-204ENST00000392003 SYPL2Q5VXT5 272 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 STEAP4Q687X5 459 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 LIMS2Q7Z4I7 341 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 ARHGAP18Q8N392 663 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 ARRDC4Q8NCT1 418 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 BTBD10Q9BSF8 475 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 CNGB3Q9NQW8 809 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 DDIT4Q9NX09 232 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 DCDC2Q9UHG0 476 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 RAD54BQ9Y620 910 aa9.87□□□□□ -0.83
COL6A3-204ENST00000392003 GPR182O15218 404 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 BEST1O76090 585 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 KITP10721 976 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 PRKAR2AP13861 404 aaKnown RBP9.86□□□□□ -0.83
COL6A3-204ENST00000392003 ERCC2P18074 760 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 TYK2P29597 1187 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 SERPINB6P35237 376 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 HIC1Q14526 733 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 KRT72Q14CN4 511 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 CCDC6Q16204 474 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 TRIM68Q6AZZ1 485 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 ITPRIPL1Q6GPH6 555 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 FAM35AQ86V20 835 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 METTL23Q86XA0 190 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 NETO2Q8NC67 525 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 PPP4R1Q8TF05 950 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 SREK1Q8WXA9 508 aaKnown RBP9.86□□□□□ -0.83
COL6A3-204ENST00000392003 UTP4Q969X6 686 aaKnown RBP9.86□□□□□ -0.83
COL6A3-204ENST00000392003 SLC2A13Q96QE2 648 aa9.86□□□□□ -0.83
COL6A3-204ENST00000392003 FBXO6Q9NRD1 293 aaPredicted RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms