RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 NAT8LQ8N9F0 302 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 KREMEN2Q8NCW0 462 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 POF1BQ8WVV4 589 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 CPT1BQ92523 772 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 P2RY11Q96G91 374 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 RABEP2Q9H5N1 569 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 LRRC4CQ9HCJ2 640 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 XPO7Q9UIA9 1087 aaKnown RBP18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 TRHDEQ9UKU6 1024 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 SNX10Q9Y5X0 201 aa18.67■□□□□ 0.58
CCDC88C-203ENST00000389856 LCHNA4D1U4 455 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 F5H5T6 163 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 RNF103O00237 685 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 C8AP07357 584 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 HMBSP08397 361 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 GARSP41250 739 aaKnown RBP18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 MAGEA6P43360 314 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 CDK16Q00536 496 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 PIK3R6Q5UE93 754 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 PLPP4Q5VZY2 271 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 EXOC3L1Q86VI1 746 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 CHSY1Q86X52 802 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 CCDC13Q8IYE1 715 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 ATPAF2Q8N5M1 289 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 SPPL3Q8TCT6 385 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 MICAL1Q8TDZ2 1067 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 MRPS31Q92665 395 aaKnown RBP18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 ARHGEF2Q92974 986 aaKnown RBP18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 PPP1R2P1Q96PQ5 205 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 ZNF317Q96PQ6 595 aaPredicted RBP18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 LGMNQ99538 433 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 ALG13Q9NP73 1137 aaKnown RBP18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 MFHAS1Q9Y4C4 1052 aa18.66■□□□□ 0.58
CCDC88C-203ENST00000389856 IGLV3-10A0A075B6K4 115 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 C2orf71A6NGG8 1288 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 SMIM23A6NLE4 172 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 COCHO43405 550 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 LATS1O95835 1130 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 TSHRP16473 764 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 TPSB2P20231 275 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 CDC25CP30307 473 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 TPSAB1Q15661 275 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 KCTD19Q17RG1 926 aaPredicted RBP18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 RABGAP1LQ5R372 815 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 CCDC110Q8TBZ0 833 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 SEC16BQ96JE7 1060 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 TSGA13Q96PP4 275 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 ACTR5Q9H9F9 607 aaPredicted RBP18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 SEPT10Q9P0V9 454 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 VANGL2Q9ULK5 521 aa18.65■□□□□ 0.58
CCDC88C-203ENST00000389856 ALOX15BO15296 676 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 ACSL4O60488 711 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 OAS1P00973 400 aaKnown RBP18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 CCNCP24863 283 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 NDST2P52849 883 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 KCNJ11Q14654 390 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 LONRF1Q17RB8 773 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 PPM1LQ5SGD2 360 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 ANKRD20A2Q5SQ80 823 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 ANKRD20A1Q5TYW2 823 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 ANKRD20A3Q5VUR7 823 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 NPWQ8N729 165 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 ANKS4BQ8N8V4 417 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 MCUQ8NE86 351 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 UHMK1Q8TAS1 419 aaKnown RBP18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 MDM1Q8TC05 714 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 CABS1Q96KC9 395 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 TGS1Q96RS0 853 aaKnown RBP18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 SAYSD1Q9NPB0 183 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 TMEM248Q9NWD8 314 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 SENP1Q9P0U3 644 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 KLHL8Q9P2G9 620 aaPredicted RBP18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 FETUBQ9UGM5 382 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 NEU3Q9UQ49 428 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 PCDHA11Q9Y5I1 949 aa18.64■□□□□ 0.57
CCDC88C-203ENST00000389856 DRGXA6NNA5 263 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 FSBPO95073 299 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 VAV1P15498 845 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 TACR2P21452 398 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 SLCO1A2P46721 670 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 MAPKAPK2P49137 400 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 ERVFC1P60507 584 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 ITIH4Q14624 930 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 PARP6Q2NL67 630 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 ANO4Q32M45 955 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 RAP1GAP2Q684P5 730 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 CCDC121Q6ZUS5 278 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 UMODL1-AS1Q8N2C9 162 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 LEMD2Q8NC56 503 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 RPRD1AQ96P16 312 aaPredicted RBP18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 XAB2Q9HCS7 855 aaKnown RBP18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 EIF2B3Q9NR50 452 aaKnown RBP18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 ASAH2Q9NR71 780 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 ARHGAP42A6NI28 874 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 DFFAO00273 331 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 F11P03951 625 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 MBL2P11226 248 aaPredicted RBP18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 PHBP35232 272 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 SLC18A1P54219 525 aa18.63■□□□□ 0.57
CCDC88C-203ENST00000389856 CBLBQ13191 982 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 143.5 ms