RNA–Protein interactions for RNA: ENST00000324340.13

DDX39A-202, Transcript of DExD-box helicase 39A, humanhuman

TSL 1 (best)

Gene DDX39A, Length 1,355 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-202ENST00000324340 C14orf80Q86SX3 495 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 RBM23Q86U06 439 aaKnown RBP13.1□□□□□ -0.31
DDX39A-202ENST00000324340 ARL14EPQ8N8R7 260 aaPredicted RBP13.1□□□□□ -0.31
DDX39A-202ENST00000324340 TSEN2Q8NCE0 465 aaKnown RBP13.1□□□□□ -0.31
DDX39A-202ENST00000324340 SHKBP1Q8TBC3 707 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 RNF217Q8TC41 542 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 LRRC45Q96CN5 670 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 GCNAQ96QF7 691 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 TRIM51Q9BSJ1 452 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 KLC2Q9H0B6 622 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 ATXN3LQ9H3M9 355 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 RETREG1Q9H6L5 497 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 CATSPERBQ9H7T0 1116 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 EPB41L5Q9HCM4 733 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 ZNF148Q9UQR1 794 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 MFHAS1Q9Y4C4 1052 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 HEY1Q9Y5J3 304 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 NOTCH4Q99466 2003 aa13.1□□□□□ -0.31
DDX39A-202ENST00000324340 HELZP42694 1942 aaKnown RBP13.1□□□□□ -0.31
DDX39A-202ENST00000324340 TRAV19A0A0A6YYK7 116 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 CCDC195A0A1B0GUA6 201 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 CFAP69A5D8W1 941 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 HACD1B0YJ81 288 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 NRG2O14511 850 aaPredicted RBP13.09□□□□□ -0.31
DDX39A-202ENST00000324340 NCAM2O15394 837 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 GREM1O60565 184 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 KLKB1P03952 638 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 SRGAP2BP0DMP2 458 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 STIP1P31948 543 aaKnown RBP13.09□□□□□ -0.31
DDX39A-202ENST00000324340 SERPINB6P35237 376 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 SCTRP47872 440 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 SLC11A2P49281 568 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 CUL1Q13616 776 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 GKAP1Q5VSY0 366 aaPredicted RBP13.09□□□□□ -0.31
DDX39A-202ENST00000324340 ZC3H18Q86VM9 953 aaKnown RBP13.09□□□□□ -0.31
DDX39A-202ENST00000324340 LZTR1Q8N653 840 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 NPWQ8N729 165 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 VN1R2Q8NFZ6 395 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 ADAMTS19Q8TE59 1207 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 CASKIN2Q8WXE0 1202 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 PPP2R3CQ969Q6 453 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 ITFG2Q969R8 447 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 RTP4Q96DX8 246 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 CYP2S1Q96SQ9 504 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 TMEM121Q9BTD3 319 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 SLC46A2Q9BY10 475 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 SFXN1Q9H9B4 322 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 USP29Q9HBJ7 922 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 TRPC7Q9HCX4 862 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 FAM114A2Q9NRY5 505 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 GKN1Q9NS71 199 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 DZANK1Q9NVP4 752 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 ZMYM5Q9UJ78 669 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 DOCK4Q8N1I0 1966 aa13.09□□□□□ -0.31
DDX39A-202ENST00000324340 A0A1W2PPC1 479 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 E7EVH7 732 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 RFXAPO00287 272 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 AHCYL1O43865 530 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 ZNF189O75820 626 aaPredicted RBP13.08□□□□□ -0.31
DDX39A-202ENST00000324340 ATP6V1G2O95670 118 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 RHOQP17081 205 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 TACR2P21452 398 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 IVDP26440 423 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 ECHS1P30084 290 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 CORO1AP31146 461 aaKnown RBP13.08□□□□□ -0.31
DDX39A-202ENST00000324340 CCNG1P51959 295 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 ZXDBP98169 803 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 GALNT2Q10471 571 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 BIRC2Q13490 618 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 ITIH4Q14624 930 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 NAA25Q14CX7 972 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 PDK1Q15118 436 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 PPP1R7Q15435 360 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 SKIDA1Q1XH10 827 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 SLC5A9Q2M3M2 681 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 LRIT3Q3SXY7 679 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 SLC45A4Q5BKX6 768 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 FAM133BQ5BKY9 247 aaKnown RBP13.08□□□□□ -0.31
DDX39A-202ENST00000324340 CMPK2Q5EBM0 449 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 AFMIDQ63HM1 303 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 RAP1GAP2Q684P5 730 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 NAIF1Q69YI7 327 aaPredicted RBP13.08□□□□□ -0.31
DDX39A-202ENST00000324340 FBXL22Q6P050 247 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 CHRDL2Q6WN34 429 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 Q6ZNB5 142 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 CROCCP2Q86T23 111 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 CDKL3Q8IVW4 592 aaPredicted RBP13.08□□□□□ -0.31
DDX39A-202ENST00000324340 FAM217AQ8IXS0 508 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 TEX9Q8N6V9 391 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 RTL3Q8N8U3 475 aaKnown RBP13.08□□□□□ -0.31
DDX39A-202ENST00000324340 CCDC89Q8N998 374 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 CFAP61Q8NHU2 1237 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 SEC16BQ96JE7 1060 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 QKIQ96PU8 341 aaKnown RBP eCLIP13.08□□□□□ -0.31
DDX39A-202ENST00000324340 FAM129AQ9BZQ8 928 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 ZYG11BQ9C0D3 744 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 NSUN3Q9H649 340 aaKnown RBP13.08□□□□□ -0.31
DDX39A-202ENST00000324340 TASP1Q9H6P5 420 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 PCDH9Q9HC56 1237 aa13.08□□□□□ -0.31
DDX39A-202ENST00000324340 TMEM248Q9NWD8 314 aa13.08□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms