RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 A0A1W2PP64 1363 aa23.53■■□□□ 1.36
CLN3-256ENST00000637107 USP6P35125 1406 aa23.53■■□□□ 1.36
CLN3-256ENST00000637107 PAK3O75914 559 aaPredicted RBP23.53■■□□□ 1.36
CLN3-256ENST00000637107 ZNF692Q9BU19 519 aaPredicted RBP23.52■■□□□ 1.36
CLN3-256ENST00000637107 KTN1Q86UP2 1357 aaKnown RBP23.52■■□□□ 1.36
CLN3-256ENST00000637107 CCDC184Q52MB2 194 aa23.51■■□□□ 1.35
CLN3-256ENST00000637107 HDGFL2Q7Z4V5 671 aaPredicted RBP23.51■■□□□ 1.35
CLN3-256ENST00000637107 TERF2IPQ9NYB0 399 aa23.51■■□□□ 1.35
CLN3-256ENST00000637107 SPATA31A3Q5VYP0 1347 aa23.51■■□□□ 1.35
CLN3-256ENST00000637107 SBNO1A3KN83 1393 aa23.5■■□□□ 1.35
CLN3-256ENST00000637107 ANKRD36BQ8N2N9 1353 aa23.5■■□□□ 1.35
CLN3-256ENST00000637107 MON2Q7Z3U7 1717 aa23.49■■□□□ 1.35
CLN3-256ENST00000637107 LMOD2Q6P5Q4 547 aa23.49■■□□□ 1.35
CLN3-256ENST00000637107 TNS3Q68CZ2 1445 aa23.49■■□□□ 1.35
CLN3-256ENST00000637107 SSH2Q76I76 1423 aa23.49■■□□□ 1.35
CLN3-256ENST00000637107 SUPT16HQ9Y5B9 1047 aaKnown RBP23.48■■□□□ 1.35
CLN3-256ENST00000637107 ALS2Q96Q42 1657 aa23.47■■□□□ 1.35
CLN3-256ENST00000637107 PNPLA6Q8IY17 1366 aa23.47■■□□□ 1.35
CLN3-256ENST00000637107 JCADQ9P266 1359 aa23.47■■□□□ 1.35
CLN3-256ENST00000637107 NRKQ7Z2Y5 1582 aa23.46■■□□□ 1.35
CLN3-256ENST00000637107 TTC21BQ7Z4L5 1316 aa23.45■■□□□ 1.35
CLN3-256ENST00000637107 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.45■■□□□ 1.35
CLN3-256ENST00000637107 CARD14Q9BXL6 1004 aa23.45■■□□□ 1.35
CLN3-256ENST00000637107 PLEKHG5O94827 1062 aa23.45■■□□□ 1.34
CLN3-256ENST00000637107 NUTM2GQ5VZR2 741 aa23.45■■□□□ 1.34
CLN3-256ENST00000637107 SHPRHQ149N8 1683 aa23.44■■□□□ 1.34
CLN3-256ENST00000637107 HNRNPUQ00839 825 aaKnown RBP eCLIP23.44■■□□□ 1.34
CLN3-256ENST00000637107 PANK3Q9H999 370 aa23.44■■□□□ 1.34
CLN3-256ENST00000637107 MRS2Q9HD23 443 aa23.44■■□□□ 1.34
CLN3-256ENST00000637107 ABTB2Q8N961 1025 aa23.43■■□□□ 1.34
CLN3-256ENST00000637107 EDC4Q6P2E9 1401 aaKnown RBP23.43■■□□□ 1.34
CLN3-256ENST00000637107 BRD4O60885 1362 aaPredicted RBP23.42■■□□□ 1.34
CLN3-256ENST00000637107 ARHGEF10O15013 1369 aa23.42■■□□□ 1.34
CLN3-256ENST00000637107 PIK3C2AO00443 1686 aa23.41■■□□□ 1.34
CLN3-256ENST00000637107 CABLES1Q8TDN4 633 aa23.4■■□□□ 1.34
CLN3-256ENST00000637107 COL22A1Q8NFW1 1626 aaPredicted RBP23.4■■□□□ 1.34
CLN3-256ENST00000637107 NME9Q86XW9 330 aa23.39■■□□□ 1.34
CLN3-256ENST00000637107 NSD3Q9BZ95 1437 aa23.39■■□□□ 1.34
CLN3-256ENST00000637107 TTC21AQ8NDW8 1320 aa23.39■■□□□ 1.33
CLN3-256ENST00000637107 ZRANB1Q9UGI0 708 aa23.39■■□□□ 1.33
CLN3-256ENST00000637107 NUTM2BA6NNL0 878 aaPredicted RBP23.37■■□□□ 1.33
CLN3-256ENST00000637107 NUTM2EB1AL46 878 aaPredicted RBP23.37■■□□□ 1.33
CLN3-256ENST00000637107 NUTM2AQ8IVF1 878 aaPredicted RBP23.37■■□□□ 1.33
CLN3-256ENST00000637107 NLRP6P59044 892 aa23.37■■□□□ 1.33
CLN3-256ENST00000637107 FAM9BQ8IZU0 186 aa23.36■■□□□ 1.33
CLN3-256ENST00000637107 SPATA31A6Q5VVP1 1343 aa23.36■■□□□ 1.33
CLN3-256ENST00000637107 MED1Q15648 1581 aaPredicted RBP23.35■■□□□ 1.33
CLN3-256ENST00000637107 NLRP13Q86W25 1043 aa23.34■■□□□ 1.33
CLN3-256ENST00000637107 FYB1O15117 783 aa23.33■■□□□ 1.33
CLN3-256ENST00000637107 LRP6O75581 1613 aa23.33■■□□□ 1.33
CLN3-256ENST00000637107 MARF1Q9Y4F3 1742 aaKnown RBP23.33■■□□□ 1.33
CLN3-256ENST00000637107 CRYBG1Q9Y4K1 1723 aa23.33■■□□□ 1.33
CLN3-256ENST00000637107 ABCA3Q99758 1704 aa23.33■■□□□ 1.32
CLN3-256ENST00000637107 CNGB1Q14028 1251 aaPredicted RBP23.32■■□□□ 1.32
CLN3-256ENST00000637107 GGNBP2Q9H3C7 697 aa23.31■■□□□ 1.32
CLN3-256ENST00000637107 PER1O15534 1290 aaPredicted RBP23.31■■□□□ 1.32
CLN3-256ENST00000637107 USP19O94966 1318 aa23.31■■□□□ 1.32
CLN3-256ENST00000637107 USP31Q70CQ4 1352 aa23.3■■□□□ 1.32
CLN3-256ENST00000637107 ADAMTS2O95450 1211 aa23.3■■□□□ 1.32
CLN3-256ENST00000637107 HAP1P54257 671 aaPredicted RBP23.3■■□□□ 1.32
CLN3-256ENST00000637107 KIF20BQ96Q89 1820 aa23.3■■□□□ 1.32
CLN3-256ENST00000637107 PHRF1Q9P1Y6 1649 aaKnown RBP23.3■■□□□ 1.32
CLN3-256ENST00000637107 CGNL1Q0VF96 1302 aa23.29■■□□□ 1.32
CLN3-256ENST00000637107 KNSTRNQ9Y448 316 aa23.29■■□□□ 1.32
CLN3-256ENST00000637107 OVOS2A0A0J9YW53 1432 aa23.28■■□□□ 1.32
CLN3-256ENST00000637107 OVOS2Q6IE36 1432 aa23.28■■□□□ 1.32
CLN3-256ENST00000637107 SOX12O15370 315 aa23.27■■□□□ 1.32
CLN3-256ENST00000637107 GCP02774 474 aa23.27■■□□□ 1.32
CLN3-256ENST00000637107 FKBP8Q14318 412 aa23.27■■□□□ 1.32
CLN3-256ENST00000637107 USP54Q70EL1 1684 aa23.27■■□□□ 1.32
CLN3-256ENST00000637107 COG3Q96JB2 828 aa23.26■■□□□ 1.31
CLN3-256ENST00000637107 SLIT3O75094 1523 aa23.26■■□□□ 1.31
CLN3-256ENST00000637107 RALBP1Q15311 655 aa23.25■■□□□ 1.31
CLN3-256ENST00000637107 ZC3H6P61129 1189 aaKnown RBP23.25■■□□□ 1.31
CLN3-256ENST00000637107 AMER1Q5JTC6 1135 aaPredicted RBP23.25■■□□□ 1.31
CLN3-256ENST00000637107 NEFLP07196 543 aa23.24■■□□□ 1.31
CLN3-256ENST00000637107 MEX3CQ5U5Q3 659 aaKnown RBP23.23■■□□□ 1.31
CLN3-256ENST00000637107 ZBED9Q6R2W3 1325 aa23.23■■□□□ 1.31
CLN3-256ENST00000637107 FBLN1P23142 703 aa23.23■■□□□ 1.31
CLN3-256ENST00000637107 C8orf37Q96NL8 207 aa23.22■■□□□ 1.31
CLN3-256ENST00000637107 MYBBP1AQ9BQG0 1328 aaKnown RBP23.22■■□□□ 1.31
CLN3-256ENST00000637107 KIAA0232Q92628 1395 aa23.21■■□□□ 1.31
CLN3-256ENST00000637107 KCNH5Q8NCM2 988 aa23.21■■□□□ 1.31
CLN3-256ENST00000637107 NFAT5O94916 1531 aa23.2■■□□□ 1.3
CLN3-256ENST00000637107 FAM83GA6ND36 823 aa23.2■■□□□ 1.3
CLN3-256ENST00000637107 CC2D1BQ5T0F9 858 aaKnown RBP23.2■■□□□ 1.3
CLN3-256ENST00000637107 PELP1Q8IZL8 1130 aaKnown RBP23.2■■□□□ 1.3
CLN3-256ENST00000637107 ANKRD26Q9UPS8 1709 aa23.19■■□□□ 1.3
CLN3-256ENST00000637107 CHRNA2Q15822 529 aa23.19■■□□□ 1.3
CLN3-256ENST00000637107 ZBTB7CA1YPR0 619 aa23.18■■□□□ 1.3
CLN3-256ENST00000637107 PNISRQ8TF01 805 aaKnown RBP23.18■■□□□ 1.3
CLN3-256ENST00000637107 PRDM11Q9NQV5 511 aa23.18■■□□□ 1.3
CLN3-256ENST00000637107 PARD3Q8TEW0 1356 aa23.18■■□□□ 1.3
CLN3-256ENST00000637107 NGLY1Q96IV0 654 aa23.18■■□□□ 1.3
CLN3-256ENST00000637107 NSD2O96028 1365 aa23.17■■□□□ 1.3
CLN3-256ENST00000637107 TNNT2P45379 298 aaPredicted RBP23.17■■□□□ 1.3
CLN3-256ENST00000637107 CPDO75976 1380 aa23.16■■□□□ 1.3
CLN3-256ENST00000637107 ARHGEF25Q86VW2 580 aa23.16■■□□□ 1.3
CLN3-256ENST00000637107 RRS1Q15050 365 aaKnown RBP23.14■■□□□ 1.3
CLN3-256ENST00000637107 MORC1Q86VD1 984 aa23.14■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms