RNA–Protein interactions for RNA: ENST00000621990.4

PDPN-212, Transcript of podoplanin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PDPN, Length 2,738 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-212ENST00000621990 CPSF1Q10570 1443 aaKnown RBP12.18□□□□□ -0.46
PDPN-212ENST00000621990 IGHDP01880 384 aa12.17□□□□□ -0.46
PDPN-212ENST00000621990 PANK1Q8TE04 598 aa12.17□□□□□ -0.46
PDPN-212ENST00000621990 CABP1Q9NZU7 370 aa12.17□□□□□ -0.46
PDPN-212ENST00000621990 CPS1P31327 1500 aa12.17□□□□□ -0.46
PDPN-212ENST00000621990 FAM135BQ49AJ0 1406 aa12.17□□□□□ -0.46
PDPN-212ENST00000621990 TRIM35Q9UPQ4 493 aa12.17□□□□□ -0.46
PDPN-212ENST00000621990 MON2Q7Z3U7 1717 aa12.17□□□□□ -0.46
PDPN-212ENST00000621990 TMPOP42166 694 aaKnown RBP12.17□□□□□ -0.46
PDPN-212ENST00000621990 NPM2Q86SE8 214 aaKnown RBP12.17□□□□□ -0.46
PDPN-212ENST00000621990 ZMYM3Q14202 1370 aa12.16□□□□□ -0.46
PDPN-212ENST00000621990 CANXP27824 592 aaKnown RBP12.16□□□□□ -0.46
PDPN-212ENST00000621990 SIRT1Q96EB6 747 aa12.16□□□□□ -0.46
PDPN-212ENST00000621990 COG6Q9Y2V7 657 aa12.16□□□□□ -0.46
PDPN-212ENST00000621990 LRRC7Q96NW7 1537 aa12.16□□□□□ -0.46
PDPN-212ENST00000621990 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.16□□□□□ -0.46
PDPN-212ENST00000621990 DDRGK1Q96HY6 314 aa12.16□□□□□ -0.46
PDPN-212ENST00000621990 EDC4Q6P2E9 1401 aaKnown RBP12.15□□□□□ -0.46
PDPN-212ENST00000621990 UBR1Q8IWV7 1749 aa12.15□□□□□ -0.46
PDPN-212ENST00000621990 RLBP1P12271 317 aa12.15□□□□□ -0.47
PDPN-212ENST00000621990 PNNQ9H307 717 aaKnown RBP12.15□□□□□ -0.47
PDPN-212ENST00000621990 METP08581 1390 aa12.14□□□□□ -0.47
PDPN-212ENST00000621990 MAP2P11137 1827 aaKnown RBP12.14□□□□□ -0.47
PDPN-212ENST00000621990 AKAP12Q02952 1782 aa12.14□□□□□ -0.47
PDPN-212ENST00000621990 DIAPH1O60610 1272 aaKnown RBP12.14□□□□□ -0.47
PDPN-212ENST00000621990 WAPLQ7Z5K2 1190 aa12.14□□□□□ -0.47
PDPN-212ENST00000621990 SENP3Q9H4L4 574 aaPredicted RBP12.14□□□□□ -0.47
PDPN-212ENST00000621990 MAPK8IP3Q9UPT6 1336 aa12.14□□□□□ -0.47
PDPN-212ENST00000621990 FRAT1Q92837 279 aaPredicted RBP12.14□□□□□ -0.47
PDPN-212ENST00000621990 U2SURPO15042 1029 aaKnown RBP12.13□□□□□ -0.47
PDPN-212ENST00000621990 FCHSD2O94868 740 aa12.13□□□□□ -0.47
PDPN-212ENST00000621990 PMFBP1Q8TBY8 1022 aa12.13□□□□□ -0.47
PDPN-212ENST00000621990 C3P01024 1663 aa12.13□□□□□ -0.47
PDPN-212ENST00000621990 CDK12Q9NYV4 1490 aaPredicted RBP12.13□□□□□ -0.47
PDPN-212ENST00000621990 PPIP5K1Q6PFW1 1433 aa12.12□□□□□ -0.47
PDPN-212ENST00000621990 WASLO00401 505 aaPredicted RBP12.12□□□□□ -0.47
PDPN-212ENST00000621990 AATKQ6ZMQ8 1374 aa12.12□□□□□ -0.47
PDPN-212ENST00000621990 POLKQ9UBT6 870 aa12.12□□□□□ -0.47
PDPN-212ENST00000621990 ITSN1Q15811 1721 aa12.11□□□□□ -0.47
PDPN-212ENST00000621990 PCDHB15Q9Y5E8 787 aa12.11□□□□□ -0.47
PDPN-212ENST00000621990 RGS3P49796 1198 aa12.11□□□□□ -0.47
PDPN-212ENST00000621990 MVPQ14764 893 aaKnown RBP12.11□□□□□ -0.47
PDPN-212ENST00000621990 ZKSCAN2Q63HK3 967 aa12.11□□□□□ -0.47
PDPN-212ENST00000621990 RSPH6AQ9H0K4 717 aa12.11□□□□□ -0.47
PDPN-212ENST00000621990 TNNQ9UQP3 1299 aa12.11□□□□□ -0.47
PDPN-212ENST00000621990 TNRQ92752 1358 aa12.1□□□□□ -0.47
PDPN-212ENST00000621990 TSR2Q969E8 191 aaKnown RBP12.1□□□□□ -0.47
PDPN-212ENST00000621990 TMEM2Q9UHN6 1383 aa12.1□□□□□ -0.47
PDPN-212ENST00000621990 BCL2L13Q9BXK5 485 aa12.1□□□□□ -0.47
PDPN-212ENST00000621990 TOPAZ1Q8N9V7 1692 aa12.1□□□□□ -0.47
PDPN-212ENST00000621990 HDGFP51858 240 aaKnown RBP12.1□□□□□ -0.47
PDPN-212ENST00000621990 RIPK4P57078 832 aa12.1□□□□□ -0.47
PDPN-212ENST00000621990 EXOSC9Q06265 439 aaKnown RBP12.1□□□□□ -0.47
PDPN-212ENST00000621990 MLECQ14165 292 aa12.1□□□□□ -0.47
PDPN-212ENST00000621990 NRKQ7Z2Y5 1582 aa12.09□□□□□ -0.47
PDPN-212ENST00000621990 NBR1Q14596 966 aa12.09□□□□□ -0.47
PDPN-212ENST00000621990 ADAMTS13Q76LX8 1427 aa12.08□□□□□ -0.48
PDPN-212ENST00000621990 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.08□□□□□ -0.48
PDPN-212ENST00000621990 DZIP1LQ8IYY4 767 aaKnown RBP12.08□□□□□ -0.48
PDPN-212ENST00000621990 SSH1Q8WYL5 1049 aa12.08□□□□□ -0.48
PDPN-212ENST00000621990 USP35Q9P2H5 1018 aa12.08□□□□□ -0.48
PDPN-212ENST00000621990 RWDD1Q9H446 243 aaPredicted RBP12.07□□□□□ -0.48
PDPN-212ENST00000621990 TRIM27P14373 513 aa12.07□□□□□ -0.48
PDPN-212ENST00000621990 IL13P35225 146 aa12.07□□□□□ -0.48
PDPN-212ENST00000621990 BRPF1P55201 1214 aaPredicted RBP12.07□□□□□ -0.48
PDPN-212ENST00000621990 ZNF428Q96B54 188 aa12.07□□□□□ -0.48
PDPN-212ENST00000621990 NUDT16Q96DE0 195 aaKnown RBP12.07□□□□□ -0.48
PDPN-212ENST00000621990 SMC4Q9NTJ3 1288 aa12.07□□□□□ -0.48
PDPN-212ENST00000621990 CCDC61Q9Y6R9 512 aa12.07□□□□□ -0.48
PDPN-212ENST00000621990 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.06□□□□□ -0.48
PDPN-212ENST00000621990 ALDH1L2Q3SY69 923 aa12.06□□□□□ -0.48
PDPN-212ENST00000621990 ATF7IPQ6VMQ6 1270 aa12.06□□□□□ -0.48
PDPN-212ENST00000621990 ESF1Q9H501 851 aaKnown RBP12.06□□□□□ -0.48
PDPN-212ENST00000621990 USP19O94966 1318 aa12.06□□□□□ -0.48
PDPN-212ENST00000621990 PPM1GO15355 546 aaPredicted RBP12.06□□□□□ -0.48
PDPN-212ENST00000621990 PRKAR2BP31323 418 aa12.06□□□□□ -0.48
PDPN-212ENST00000621990 TXNDC2Q86VQ3 553 aa12.06□□□□□ -0.48
PDPN-212ENST00000621990 HDAC1Q13547 482 aaPredicted RBP12.05□□□□□ -0.48
PDPN-212ENST00000621990 FTSJ3Q8IY81 847 aaKnown RBP12.05□□□□□ -0.48
PDPN-212ENST00000621990 KIF16BQ96L93 1317 aa12.05□□□□□ -0.48
PDPN-212ENST00000621990 ROBO2Q9HCK4 1378 aa12.05□□□□□ -0.48
PDPN-212ENST00000621990 PLEKHG1Q9ULL1 1385 aa12.05□□□□□ -0.48
PDPN-212ENST00000621990 NALCNQ8IZF0 1738 aa12.05□□□□□ -0.48
PDPN-212ENST00000621990 DEKP35659 375 aaKnown RBP12.05□□□□□ -0.48
PDPN-212ENST00000621990 NFE2L2Q16236 605 aa12.05□□□□□ -0.48
PDPN-212ENST00000621990 NME9Q86XW9 330 aa12.05□□□□□ -0.48
PDPN-212ENST00000621990 DLG5Q8TDM6 1919 aa12.05□□□□□ -0.48
PDPN-212ENST00000621990 ZNF692Q9BU19 519 aaPredicted RBP12.04□□□□□ -0.48
PDPN-212ENST00000621990 DDX19BQ9UMR2 479 aa12.04□□□□□ -0.48
PDPN-212ENST00000621990 PRR36Q9H6K5 1346 aa12.04□□□□□ -0.48
PDPN-212ENST00000621990 RTL5Q5HYW3 569 aaPredicted RBP12.04□□□□□ -0.48
PDPN-212ENST00000621990 FBLN1P23142 703 aa12.03□□□□□ -0.48
PDPN-212ENST00000621990 PDZRN3Q9UPQ7 1066 aa12.03□□□□□ -0.48
PDPN-212ENST00000621990 EMILIN1Q9Y6C2 1016 aa12.03□□□□□ -0.48
PDPN-212ENST00000621990 CALD1Q05682 793 aaKnown RBP12.03□□□□□ -0.48
PDPN-212ENST00000621990 PHACTR3Q96KR7 559 aa12.03□□□□□ -0.48
PDPN-212ENST00000621990 NOB1Q9ULX3 412 aaKnown RBP12.03□□□□□ -0.48
PDPN-212ENST00000621990 SLIT1O75093 1534 aa12.02□□□□□ -0.49
PDPN-212ENST00000621990 IPO8O15397 1037 aaKnown RBP12.02□□□□□ -0.49
PDPN-212ENST00000621990 NEFMP07197 916 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms