RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 HECW2Q9P2P5 1572 aa24.71■■□□□ 1.55
PDLIM3-212ENST00000620787 CAMSAP1Q5T5Y3 1602 aa24.71■■□□□ 1.55
PDLIM3-212ENST00000620787 ANKRD26Q9UPS8 1709 aa24.7■■□□□ 1.55
PDLIM3-212ENST00000620787 FRMPD1Q5SYB0 1578 aa24.7■■□□□ 1.54
PDLIM3-212ENST00000620787 TRAK2O60296 914 aa24.7■■□□□ 1.54
PDLIM3-212ENST00000620787 PANK2Q9BZ23 570 aa24.69■■□□□ 1.54
PDLIM3-212ENST00000620787 ABCC11Q96J66 1382 aa24.69■■□□□ 1.54
PDLIM3-212ENST00000620787 HSCBQ8IWL3 235 aa24.68■■□□□ 1.54
PDLIM3-212ENST00000620787 NOB1Q9ULX3 412 aaKnown RBP24.68■■□□□ 1.54
PDLIM3-212ENST00000620787 IL16Q14005 1332 aa24.68■■□□□ 1.54
PDLIM3-212ENST00000620787 SIGLEC1Q9BZZ2 1709 aa24.68■■□□□ 1.54
PDLIM3-212ENST00000620787 TMEM57Q8N5G2 664 aa24.67■■□□□ 1.54
PDLIM3-212ENST00000620787 UBE2Q2Q8WVN8 375 aa24.67■■□□□ 1.54
PDLIM3-212ENST00000620787 CABP2Q9NPB3 220 aa24.67■■□□□ 1.54
PDLIM3-212ENST00000620787 ZBTB40Q9NUA8 1239 aa24.67■■□□□ 1.54
PDLIM3-212ENST00000620787 PIK3C2BO00750 1634 aa24.67■■□□□ 1.54
PDLIM3-212ENST00000620787 A0A1W2PP64 1363 aa24.67■■□□□ 1.54
PDLIM3-212ENST00000620787 NEXMIFQ5QGS0 1516 aa24.66■■□□□ 1.54
PDLIM3-212ENST00000620787 U2SURPO15042 1029 aaKnown RBP24.66■■□□□ 1.54
PDLIM3-212ENST00000620787 DDIT3P35638 169 aa24.66■■□□□ 1.54
PDLIM3-212ENST00000620787 RBM25P49756 843 aaKnown RBP24.65■■□□□ 1.54
PDLIM3-212ENST00000620787 ABCC3O15438 1527 aa24.65■■□□□ 1.54
PDLIM3-212ENST00000620787 DDX11L8A8MPP1 907 aa24.63■■□□□ 1.53
PDLIM3-212ENST00000620787 NUCB1Q02818 461 aa24.63■■□□□ 1.53
PDLIM3-212ENST00000620787 ASXL2Q76L83 1435 aa24.63■■□□□ 1.53
PDLIM3-212ENST00000620787 CFAP74Q9C0B2 1584 aa24.62■■□□□ 1.53
PDLIM3-212ENST00000620787 SNX21Q969T3 373 aa24.62■■□□□ 1.53
PDLIM3-212ENST00000620787 KIF16BQ96L93 1317 aa24.62■■□□□ 1.53
PDLIM3-212ENST00000620787 MRE11P49959 708 aa24.61■■□□□ 1.53
PDLIM3-212ENST00000620787 GGNBP2Q9H3C7 697 aa24.61■■□□□ 1.53
PDLIM3-212ENST00000620787 NUTM2DQ5VT03 806 aaPredicted RBP24.6■■□□□ 1.53
PDLIM3-212ENST00000620787 GGT6Q6P531 493 aa24.6■■□□□ 1.53
PDLIM3-212ENST00000620787 MED14O60244 1454 aa24.59■■□□□ 1.53
PDLIM3-212ENST00000620787 RIPK4P57078 832 aa24.59■■□□□ 1.53
PDLIM3-212ENST00000620787 CLCN1P35523 988 aa24.58■■□□□ 1.53
PDLIM3-212ENST00000620787 IPO8O15397 1037 aaKnown RBP24.58■■□□□ 1.52
PDLIM3-212ENST00000620787 LNPKQ9C0E8 428 aa24.58■■□□□ 1.52
PDLIM3-212ENST00000620787 VGFO15240 615 aaPredicted RBP24.57■■□□□ 1.52
PDLIM3-212ENST00000620787 POGZQ7Z3K3 1410 aa24.57■■□□□ 1.52
PDLIM3-212ENST00000620787 MLH3Q9UHC1 1453 aa24.57■■□□□ 1.52
PDLIM3-212ENST00000620787 SAFB2Q14151 953 aaKnown RBP eCLIP24.57■■□□□ 1.52
PDLIM3-212ENST00000620787 CHD1LQ86WJ1 897 aa24.57■■□□□ 1.52
PDLIM3-212ENST00000620787 ALDH1L2Q3SY69 923 aa24.56■■□□□ 1.52
PDLIM3-212ENST00000620787 CLTCQ00610 1675 aaKnown RBP24.56■■□□□ 1.52
PDLIM3-212ENST00000620787 GRPEL1Q9HAV7 217 aa24.56■■□□□ 1.52
PDLIM3-212ENST00000620787 CD163L1Q9NR16 1453 aa24.55■■□□□ 1.52
PDLIM3-212ENST00000620787 FYB1O15117 783 aa24.54■■□□□ 1.52
PDLIM3-212ENST00000620787 TNPO1Q92973 898 aaKnown RBP24.54■■□□□ 1.52
PDLIM3-212ENST00000620787 ISY1Q9ULR0 285 aaKnown RBP24.54■■□□□ 1.52
PDLIM3-212ENST00000620787 CIZ1Q9ULV3 898 aaPredicted RBP24.54■■□□□ 1.52
PDLIM3-212ENST00000620787 CDC42BPGQ6DT37 1551 aa24.54■■□□□ 1.52
PDLIM3-212ENST00000620787 BMP2KLQ5H9B9 411 aa24.53■■□□□ 1.52
PDLIM3-212ENST00000620787 LRRC7Q96NW7 1537 aa24.53■■□□□ 1.52
PDLIM3-212ENST00000620787 KIF20BQ96Q89 1820 aa24.53■■□□□ 1.52
PDLIM3-212ENST00000620787 PNPLA6Q8IY17 1366 aa24.53■■□□□ 1.52
PDLIM3-212ENST00000620787 SRPK2P78362 688 aaKnown RBP24.52■■□□□ 1.52
PDLIM3-212ENST00000620787 KIF2CQ99661 725 aa24.52■■□□□ 1.52
PDLIM3-212ENST00000620787 DIAPH1O60610 1272 aaKnown RBP24.51■■□□□ 1.51
PDLIM3-212ENST00000620787 PNNQ9H307 717 aaKnown RBP24.51■■□□□ 1.51
PDLIM3-212ENST00000620787 PTPRMP28827 1452 aa24.51■■□□□ 1.51
PDLIM3-212ENST00000620787 RAB3GAP1Q15042 981 aa24.51■■□□□ 1.51
PDLIM3-212ENST00000620787 PPIP5K1Q6PFW1 1433 aa24.51■■□□□ 1.51
PDLIM3-212ENST00000620787 MYO5BQ9ULV0 1848 aa24.51■■□□□ 1.51
PDLIM3-212ENST00000620787 ATAD2Q6PL18 1390 aa24.5■■□□□ 1.51
PDLIM3-212ENST00000620787 BRPF1P55201 1214 aaPredicted RBP24.5■■□□□ 1.51
PDLIM3-212ENST00000620787 HSP90AB1P08238 724 aaKnown RBP24.5■■□□□ 1.51
PDLIM3-212ENST00000620787 ZFYVE9O95405 1425 aa24.49■■□□□ 1.51
PDLIM3-212ENST00000620787 TERF2IPQ9NYB0 399 aa24.49■■□□□ 1.51
PDLIM3-212ENST00000620787 STK26Q9P289 416 aa24.47■■□□□ 1.51
PDLIM3-212ENST00000620787 GBP4Q96PP9 640 aa24.47■■□□□ 1.51
PDLIM3-212ENST00000620787 PIK3R4Q99570 1358 aa24.47■■□□□ 1.51
PDLIM3-212ENST00000620787 ZBTB7BO15156 539 aaPredicted RBP24.46■■□□□ 1.51
PDLIM3-212ENST00000620787 FAM135BQ49AJ0 1406 aa24.46■■□□□ 1.51
PDLIM3-212ENST00000620787 CD2BP2O95400 341 aaKnown RBP24.46■■□□□ 1.51
PDLIM3-212ENST00000620787 PTCH1Q13635 1447 aa24.46■■□□□ 1.51
PDLIM3-212ENST00000620787 GCC1Q96CN9 775 aa24.46■■□□□ 1.51
PDLIM3-212ENST00000620787 NAP1L5Q96NT1 182 aaPredicted RBP24.46■■□□□ 1.51
PDLIM3-212ENST00000620787 ANKRD45Q5TZF3 282 aa24.45■■□□□ 1.51
PDLIM3-212ENST00000620787 ZNF428Q96B54 188 aa24.45■■□□□ 1.51
PDLIM3-212ENST00000620787 GAS2L3Q86XJ1 694 aa24.45■■□□□ 1.5
PDLIM3-212ENST00000620787 FCHSD2O94868 740 aa24.44■■□□□ 1.5
PDLIM3-212ENST00000620787 MINK1Q8N4C8 1332 aaPredicted RBP24.43■■□□□ 1.5
PDLIM3-212ENST00000620787 REREQ9P2R6 1566 aa24.43■■□□□ 1.5
PDLIM3-212ENST00000620787 TBC1D9Q6ZT07 1266 aa24.43■■□□□ 1.5
PDLIM3-212ENST00000620787 ERBB4Q15303 1308 aa24.43■■□□□ 1.5
PDLIM3-212ENST00000620787 SKOR2Q2VWA4 1001 aaPredicted RBP24.42■■□□□ 1.5
PDLIM3-212ENST00000620787 MRPL50Q8N5N7 158 aaKnown RBP24.42■■□□□ 1.5
PDLIM3-212ENST00000620787 C1orf115Q9H7X2 142 aa24.42■■□□□ 1.5
PDLIM3-212ENST00000620787 ESPNB1AK53 854 aa24.42■■□□□ 1.5
PDLIM3-212ENST00000620787 K7ELQ4 463 aaPredicted RBP24.41■■□□□ 1.5
PDLIM3-212ENST00000620787 PTMSP20962 102 aa24.41■■□□□ 1.5
PDLIM3-212ENST00000620787 PRKAR2BP31323 418 aa24.41■■□□□ 1.5
PDLIM3-212ENST00000620787 IDI1Q13907 227 aa24.41■■□□□ 1.5
PDLIM3-212ENST00000620787 ARHGAP45Q92619 1136 aa24.41■■□□□ 1.5
PDLIM3-212ENST00000620787 ARHGAP31Q2M1Z3 1444 aa24.41■■□□□ 1.5
PDLIM3-212ENST00000620787 VAMP4O75379 141 aa24.4■■□□□ 1.5
PDLIM3-212ENST00000620787 PRAM1Q96QH2 718 aa24.4■■□□□ 1.5
PDLIM3-212ENST00000620787 SIRT2Q8IXJ6 389 aa24.39■■□□□ 1.5
PDLIM3-212ENST00000620787 CHMP4BQ9H444 224 aaKnown RBP24.39■■□□□ 1.5
PDLIM3-212ENST00000620787 RBM42Q9BTD8 480 aaKnown RBP24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms