RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 NCLP19338 710 aaKnown RBP12.35□□□□□ -0.43
LIG3-216ENST00000593099 HMGB2P26583 209 aaKnown RBP12.35□□□□□ -0.43
LIG3-216ENST00000593099 KCNJ4P48050 445 aa12.35□□□□□ -0.43
LIG3-216ENST00000593099 C9orf78Q9NZ63 289 aaPredicted RBP12.35□□□□□ -0.43
LIG3-216ENST00000593099 DISP3Q9P2K9 1392 aa12.35□□□□□ -0.43
LIG3-216ENST00000593099 PPIP5K1Q6PFW1 1433 aa12.35□□□□□ -0.43
LIG3-216ENST00000593099 ADGBQ8N7X0 1667 aa12.35□□□□□ -0.43
LIG3-216ENST00000593099 TCERG1O14776 1098 aaKnown RBP12.35□□□□□ -0.43
LIG3-216ENST00000593099 EMILIN1Q9Y6C2 1016 aa12.35□□□□□ -0.43
LIG3-216ENST00000593099 ABCA9Q8IUA7 1624 aa12.34□□□□□ -0.43
LIG3-216ENST00000593099 B4GALNT3Q6L9W6 998 aa12.34□□□□□ -0.43
LIG3-216ENST00000593099 NLRP1Q9C000 1473 aa12.34□□□□□ -0.43
LIG3-216ENST00000593099 CHRNA2Q15822 529 aa12.34□□□□□ -0.43
LIG3-216ENST00000593099 EIF2AK4Q9P2K8 1649 aaKnown RBP12.33□□□□□ -0.44
LIG3-216ENST00000593099 AMOTQ4VCS5 1084 aa12.33□□□□□ -0.44
LIG3-216ENST00000593099 TRPM2O94759 1503 aa12.33□□□□□ -0.44
LIG3-216ENST00000593099 RIC3Q7Z5B4 369 aa12.32□□□□□ -0.44
LIG3-216ENST00000593099 ANKRD36BQ8N2N9 1353 aa12.32□□□□□ -0.44
LIG3-216ENST00000593099 EXOC5O00471 708 aa12.32□□□□□ -0.44
LIG3-216ENST00000593099 GPATCH3Q96I76 525 aa12.32□□□□□ -0.44
LIG3-216ENST00000593099 EFCAB6Q5THR3 1501 aa12.32□□□□□ -0.44
LIG3-216ENST00000593099 AIMP1Q12904 312 aaKnown RBP12.32□□□□□ -0.44
LIG3-216ENST00000593099 CCDC30Q5VVM6 783 aa12.32□□□□□ -0.44
LIG3-216ENST00000593099 CFAP65Q6ZU64 1925 aaKnown RBP12.32□□□□□ -0.44
LIG3-216ENST00000593099 ERICH6BQ5W0A0 696 aa12.31□□□□□ -0.44
LIG3-216ENST00000593099 SLAIN2Q9P270 581 aa12.31□□□□□ -0.44
LIG3-216ENST00000593099 NPHP4O75161 1426 aaPredicted RBP12.31□□□□□ -0.44
LIG3-216ENST00000593099 ERVK-7P63135 1459 aa12.31□□□□□ -0.44
LIG3-216ENST00000593099 CFAP44Q96MT7 982 aa12.31□□□□□ -0.44
LIG3-216ENST00000593099 KIF16BQ96L93 1317 aa12.31□□□□□ -0.44
LIG3-216ENST00000593099 ABCC11Q96J66 1382 aa12.31□□□□□ -0.44
LIG3-216ENST00000593099 SIRT1Q96EB6 747 aa12.31□□□□□ -0.44
LIG3-216ENST00000593099 UGGT1Q9NYU2 1555 aa12.31□□□□□ -0.44
LIG3-216ENST00000593099 FRAT2O75474 233 aaPredicted RBP12.31□□□□□ -0.44
LIG3-216ENST00000593099 PLEKHG1Q9ULL1 1385 aa12.3□□□□□ -0.44
LIG3-216ENST00000593099 GNAT3A8MTJ3 354 aa12.3□□□□□ -0.44
LIG3-216ENST00000593099 NFE2L2Q16236 605 aa12.3□□□□□ -0.44
LIG3-216ENST00000593099 USHBP1Q8N6Y0 703 aa12.3□□□□□ -0.44
LIG3-216ENST00000593099 ANKRD24Q8TF21 1146 aa12.3□□□□□ -0.44
LIG3-216ENST00000593099 FYB1O15117 783 aa12.29□□□□□ -0.44
LIG3-216ENST00000593099 C8orf37Q96NL8 207 aa12.29□□□□□ -0.44
LIG3-216ENST00000593099 FGD1P98174 961 aa12.29□□□□□ -0.44
LIG3-216ENST00000593099 KLHL34Q8N239 644 aa12.29□□□□□ -0.44
LIG3-216ENST00000593099 ORAI2Q96SN7 254 aa12.29□□□□□ -0.44
LIG3-216ENST00000593099 CDC42BPAQ5VT25 1732 aa12.29□□□□□ -0.44
LIG3-216ENST00000593099 KIF6Q6ZMV9 814 aa12.29□□□□□ -0.44
LIG3-216ENST00000593099 TESK2Q96S53 571 aa12.29□□□□□ -0.44
LIG3-216ENST00000593099 HDGFL1Q5TGJ6 251 aa12.28□□□□□ -0.44
LIG3-216ENST00000593099 CABLES1Q8TDN4 633 aa12.28□□□□□ -0.44
LIG3-216ENST00000593099 DZIP1LQ8IYY4 767 aaKnown RBP12.28□□□□□ -0.44
LIG3-216ENST00000593099 TMOD3Q9NYL9 352 aa12.28□□□□□ -0.44
LIG3-216ENST00000593099 HSP90B1P14625 803 aaKnown RBP12.28□□□□□ -0.44
LIG3-216ENST00000593099 BECN1Q14457 450 aa12.28□□□□□ -0.44
LIG3-216ENST00000593099 ABCC3O15438 1527 aa12.27□□□□□ -0.44
LIG3-216ENST00000593099 ARHGAP31Q2M1Z3 1444 aa12.27□□□□□ -0.44
LIG3-216ENST00000593099 TWISTNBQ3B726 338 aaPredicted RBP12.27□□□□□ -0.44
LIG3-216ENST00000593099 BTBD11A6QL63 1104 aa12.27□□□□□ -0.45
LIG3-216ENST00000593099 DDX19BQ9UMR2 479 aa12.27□□□□□ -0.45
LIG3-216ENST00000593099 GCC2Q8IWJ2 1684 aa12.27□□□□□ -0.45
LIG3-216ENST00000593099 WDR63Q8IWG1 891 aa12.26□□□□□ -0.45
LIG3-216ENST00000593099 TMEM94Q12767 1356 aa12.26□□□□□ -0.45
LIG3-216ENST00000593099 GCP02774 474 aa12.26□□□□□ -0.45
LIG3-216ENST00000593099 TMPOP42166 694 aaKnown RBP12.26□□□□□ -0.45
LIG3-216ENST00000593099 EXOSC9Q06265 439 aaKnown RBP12.26□□□□□ -0.45
LIG3-216ENST00000593099 KIAA1211Q6ZU35 1233 aa12.26□□□□□ -0.45
LIG3-216ENST00000593099 COG6Q9Y2V7 657 aa12.26□□□□□ -0.45
LIG3-216ENST00000593099 MCCP23508 829 aa12.25□□□□□ -0.45
LIG3-216ENST00000593099 IFNL2Q8IZJ0 200 aa12.25□□□□□ -0.45
LIG3-216ENST00000593099 PLXNC1O60486 1568 aa12.24□□□□□ -0.45
LIG3-216ENST00000593099 PLIN1O60240 522 aa12.24□□□□□ -0.45
LIG3-216ENST00000593099 RRP1P56182 461 aaKnown RBP12.24□□□□□ -0.45
LIG3-216ENST00000593099 STARD3NLO95772 234 aa12.24□□□□□ -0.45
LIG3-216ENST00000593099 HSP90AB2PQ58FF8 381 aa12.24□□□□□ -0.45
LIG3-216ENST00000593099 PTPRTO14522 1441 aa12.24□□□□□ -0.45
LIG3-216ENST00000593099 GLI2P10070 1586 aa12.23□□□□□ -0.45
LIG3-216ENST00000593099 AMER1Q5JTC6 1135 aaPredicted RBP12.23□□□□□ -0.45
LIG3-216ENST00000593099 MPRIPQ6WCQ1 1025 aa12.23□□□□□ -0.45
LIG3-216ENST00000593099 TSR2Q969E8 191 aaKnown RBP12.23□□□□□ -0.45
LIG3-216ENST00000593099 DCAF8L1A6NGE4 600 aa12.23□□□□□ -0.45
LIG3-216ENST00000593099 PTCD1O75127 700 aaKnown RBP12.23□□□□□ -0.45
LIG3-216ENST00000593099 PRDM15P57071 1507 aaPredicted RBP12.22□□□□□ -0.45
LIG3-216ENST00000593099 ZRANB1Q9UGI0 708 aa12.22□□□□□ -0.45
LIG3-216ENST00000593099 FBLN1P23142 703 aa12.22□□□□□ -0.45
LIG3-216ENST00000593099 FAM177BA6PVY3 158 aa12.22□□□□□ -0.45
LIG3-216ENST00000593099 TAF7Q15545 349 aaPredicted RBP12.22□□□□□ -0.45
LIG3-216ENST00000593099 TRIM6-TRIM34B2RNG4 842 aa12.22□□□□□ -0.45
LIG3-216ENST00000593099 DDRGK1Q96HY6 314 aa12.22□□□□□ -0.45
LIG3-216ENST00000593099 METP08581 1390 aa12.21□□□□□ -0.45
LIG3-216ENST00000593099 PLEKHG3A1L390 1219 aa12.21□□□□□ -0.45
LIG3-216ENST00000593099 G3BP1Q13283 466 aaKnown RBP eCLIP12.21□□□□□ -0.452e-8■■■□□ 16.8
LIG3-216ENST00000593099 NAP1L2Q9ULW6 460 aaPredicted RBP12.21□□□□□ -0.45
LIG3-216ENST00000593099 PIK3R4Q99570 1358 aa12.21□□□□□ -0.45
LIG3-216ENST00000593099 SLC4A2P04920 1241 aa12.21□□□□□ -0.45
LIG3-216ENST00000593099 MCM10Q7L590 875 aa12.21□□□□□ -0.45
LIG3-216ENST00000593099 CDCA7LQ96GN5 454 aa12.21□□□□□ -0.45
LIG3-216ENST00000593099 ARHGEF10O15013 1369 aa12.21□□□□□ -0.45
LIG3-216ENST00000593099 CT47B1P0C2W7 299 aaPredicted RBP12.21□□□□□ -0.46
LIG3-216ENST00000593099 UBTFL1P0CB47 393 aaPredicted RBP12.21□□□□□ -0.46
LIG3-216ENST00000593099 ZCRB1Q8TBF4 217 aaKnown RBP12.21□□□□□ -0.46
LIG3-216ENST00000593099 A0A1W2PP64 1363 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms