RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 LMOD2Q6P5Q4 547 aa18.72■□□□□ 0.59
VMP1-210ENST00000589823 NSD3Q9BZ95 1437 aa18.72■□□□□ 0.59
VMP1-210ENST00000589823 TTC21BQ7Z4L5 1316 aa18.72■□□□□ 0.59
VMP1-210ENST00000589823 TTC21AQ8NDW8 1320 aa18.72■□□□□ 0.59
VMP1-210ENST00000589823 HSPA1LP34931 641 aa18.71■□□□□ 0.59
VMP1-210ENST00000589823 DDX10Q13206 875 aaKnown RBP18.71■□□□□ 0.59
VMP1-210ENST00000589823 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.71■□□□□ 0.59
VMP1-210ENST00000589823 CARD14Q9BXL6 1004 aa18.71■□□□□ 0.59
VMP1-210ENST00000589823 TNS3Q68CZ2 1445 aa18.71■□□□□ 0.59
VMP1-210ENST00000589823 SSH2Q76I76 1423 aa18.71■□□□□ 0.59
VMP1-210ENST00000589823 SPATA31A3Q5VYP0 1347 aa18.71■□□□□ 0.59
VMP1-210ENST00000589823 KNSTRNQ9Y448 316 aa18.7■□□□□ 0.58
VMP1-210ENST00000589823 COL16A1Q07092 1604 aaPredicted RBP18.7■□□□□ 0.58
VMP1-210ENST00000589823 ARHGEF10O15013 1369 aa18.69■□□□□ 0.58
VMP1-210ENST00000589823 TRPM3Q9HCF6 1732 aaPredicted RBP18.69■□□□□ 0.58
VMP1-210ENST00000589823 NRKQ7Z2Y5 1582 aa18.69■□□□□ 0.58
VMP1-210ENST00000589823 ABTB2Q8N961 1025 aa18.69■□□□□ 0.58
VMP1-210ENST00000589823 CGNL1Q0VF96 1302 aa18.67■□□□□ 0.58
VMP1-210ENST00000589823 NLRP6P59044 892 aa18.65■□□□□ 0.58
VMP1-210ENST00000589823 NLRP13Q86W25 1043 aa18.65■□□□□ 0.58
VMP1-210ENST00000589823 NME9Q86XW9 330 aa18.65■□□□□ 0.58
VMP1-210ENST00000589823 ALS2Q96Q42 1657 aa18.65■□□□□ 0.58
VMP1-210ENST00000589823 JCADQ9P266 1359 aa18.65■□□□□ 0.58
VMP1-210ENST00000589823 PER1O15534 1290 aaPredicted RBP18.64■□□□□ 0.57
VMP1-210ENST00000589823 NUTM2GQ5VZR2 741 aa18.64■□□□□ 0.57
VMP1-210ENST00000589823 FYB1O15117 783 aa18.63■□□□□ 0.57
VMP1-210ENST00000589823 PNPLA6Q8IY17 1366 aa18.63■□□□□ 0.57
VMP1-210ENST00000589823 PIK3C2AO00443 1686 aa18.63■□□□□ 0.57
VMP1-210ENST00000589823 PLEKHG5O94827 1062 aa18.62■□□□□ 0.57
VMP1-210ENST00000589823 COG3Q96JB2 828 aa18.62■□□□□ 0.57
VMP1-210ENST00000589823 GGNBP2Q9H3C7 697 aa18.62■□□□□ 0.57
VMP1-210ENST00000589823 NSD2O96028 1365 aa18.61■□□□□ 0.57
VMP1-210ENST00000589823 USP31Q70CQ4 1352 aa18.61■□□□□ 0.57
VMP1-210ENST00000589823 KIF20BQ96Q89 1820 aa18.6■□□□□ 0.57
VMP1-210ENST00000589823 HAP1P54257 671 aaPredicted RBP18.6■□□□□ 0.57
VMP1-210ENST00000589823 ZRANB1Q9UGI0 708 aa18.6■□□□□ 0.57
VMP1-210ENST00000589823 SHPRHQ149N8 1683 aa18.6■□□□□ 0.57
VMP1-210ENST00000589823 AMER1Q5JTC6 1135 aaPredicted RBP18.59■□□□□ 0.57
VMP1-210ENST00000589823 OVOS2A0A0J9YW53 1432 aa18.58■□□□□ 0.57
VMP1-210ENST00000589823 OVOS2Q6IE36 1432 aa18.58■□□□□ 0.57
VMP1-210ENST00000589823 COL22A1Q8NFW1 1626 aaPredicted RBP18.58■□□□□ 0.56
VMP1-210ENST00000589823 MED1Q15648 1581 aaPredicted RBP18.58■□□□□ 0.56
VMP1-210ENST00000589823 NPC1L1Q9UHC9 1359 aa18.57■□□□□ 0.56
VMP1-210ENST00000589823 USP19O94966 1318 aa18.57■□□□□ 0.56
VMP1-210ENST00000589823 SPATA31A6Q5VVP1 1343 aa18.57■□□□□ 0.56
VMP1-210ENST00000589823 CNGB1Q14028 1251 aaPredicted RBP18.57■□□□□ 0.56
VMP1-210ENST00000589823 CC2D1BQ5T0F9 858 aaKnown RBP18.57■□□□□ 0.56
VMP1-210ENST00000589823 KCNH5Q8NCM2 988 aa18.57■□□□□ 0.56
VMP1-210ENST00000589823 CABLES1Q8TDN4 633 aa18.57■□□□□ 0.56
VMP1-210ENST00000589823 ILDR1Q86SU0 546 aaPredicted RBP18.56■□□□□ 0.56
VMP1-210ENST00000589823 MORC1Q86VD1 984 aa18.56■□□□□ 0.56
VMP1-210ENST00000589823 USP54Q70EL1 1684 aa18.56■□□□□ 0.56
VMP1-210ENST00000589823 NUTM2BA6NNL0 878 aaPredicted RBP18.55■□□□□ 0.56
VMP1-210ENST00000589823 NUTM2EB1AL46 878 aaPredicted RBP18.55■□□□□ 0.56
VMP1-210ENST00000589823 GCP02774 474 aa18.55■□□□□ 0.56
VMP1-210ENST00000589823 NUTM2AQ8IVF1 878 aaPredicted RBP18.55■□□□□ 0.56
VMP1-210ENST00000589823 SLIT3O75094 1523 aa18.54■□□□□ 0.56
VMP1-210ENST00000589823 SOX12O15370 315 aa18.54■□□□□ 0.56
VMP1-210ENST00000589823 PHRF1Q9P1Y6 1649 aaKnown RBP18.53■□□□□ 0.56
VMP1-210ENST00000589823 ANKRD26Q9UPS8 1709 aa18.53■□□□□ 0.56
VMP1-210ENST00000589823 MARF1Q9Y4F3 1742 aaKnown RBP18.52■□□□□ 0.55
VMP1-210ENST00000589823 TNNT2P45379 298 aaPredicted RBP18.51■□□□□ 0.55
VMP1-210ENST00000589823 ZC3H6P61129 1189 aaKnown RBP18.51■□□□□ 0.55
VMP1-210ENST00000589823 ABCA3Q99758 1704 aa18.51■□□□□ 0.55
VMP1-210ENST00000589823 CRYBG1Q9Y4K1 1723 aa18.51■□□□□ 0.55
VMP1-210ENST00000589823 ADAMTS2O95450 1211 aa18.49■□□□□ 0.55
VMP1-210ENST00000589823 ZBTB7CA1YPR0 619 aa18.48■□□□□ 0.55
VMP1-210ENST00000589823 MEX3CQ5U5Q3 659 aaKnown RBP18.48■□□□□ 0.55
VMP1-210ENST00000589823 NFAT5O94916 1531 aa18.48■□□□□ 0.55
VMP1-210ENST00000589823 AATKQ6ZMQ8 1374 aa18.47■□□□□ 0.55
VMP1-210ENST00000589823 PRDM11Q9NQV5 511 aa18.47■□□□□ 0.55
VMP1-210ENST00000589823 CPDO75976 1380 aa18.46■□□□□ 0.55
VMP1-210ENST00000589823 KIAA0232Q92628 1395 aa18.46■□□□□ 0.55
VMP1-210ENST00000589823 ANP32CO43423 234 aa18.46■□□□□ 0.55
VMP1-210ENST00000589823 RALBP1Q15311 655 aa18.46■□□□□ 0.55
VMP1-210ENST00000589823 LRP6O75581 1613 aa18.45■□□□□ 0.54
VMP1-210ENST00000589823 FBLN1P23142 703 aa18.45■□□□□ 0.54
VMP1-210ENST00000589823 RRS1Q15050 365 aaKnown RBP18.45■□□□□ 0.54
VMP1-210ENST00000589823 ARHGEF25Q86VW2 580 aa18.45■□□□□ 0.54
VMP1-210ENST00000589823 PARD3Q8TEW0 1356 aa18.44■□□□□ 0.54
VMP1-210ENST00000589823 AMPHP49418 695 aa18.44■□□□□ 0.54
VMP1-210ENST00000589823 MAP3K19Q56UN5 1328 aa18.44■□□□□ 0.54
VMP1-210ENST00000589823 CHRNA2Q15822 529 aa18.43■□□□□ 0.54
VMP1-210ENST00000589823 DIEXFQ68CQ4 756 aaKnown RBP18.43■□□□□ 0.54
VMP1-210ENST00000589823 PRKRIP1Q9H875 184 aaPredicted RBP18.43■□□□□ 0.54
VMP1-210ENST00000589823 FAM83GA6ND36 823 aa18.42■□□□□ 0.54
VMP1-210ENST00000589823 PPM1GO15355 546 aaPredicted RBP18.42■□□□□ 0.54
VMP1-210ENST00000589823 C8orf37Q96NL8 207 aa18.42■□□□□ 0.54
VMP1-210ENST00000589823 POLKQ9UBT6 870 aa18.42■□□□□ 0.54
VMP1-210ENST00000589823 EMILIN1Q9Y6C2 1016 aa18.42■□□□□ 0.54
VMP1-210ENST00000589823 NGLY1Q96IV0 654 aa18.41■□□□□ 0.54
VMP1-210ENST00000589823 RTL1A6NKG5 1358 aa18.41■□□□□ 0.54
VMP1-210ENST00000589823 KIF24Q5T7B8 1368 aa18.41■□□□□ 0.54
VMP1-210ENST00000589823 PPP2R1AP30153 589 aa18.4■□□□□ 0.54
VMP1-210ENST00000589823 LTN1O94822 1766 aa18.4■□□□□ 0.54
VMP1-210ENST00000589823 COL14A1Q05707 1796 aaKnown RBP18.4■□□□□ 0.54
VMP1-210ENST00000589823 IP6K1Q92551 441 aa18.39■□□□□ 0.53
VMP1-210ENST00000589823 MYBBP1AQ9BQG0 1328 aaKnown RBP18.39■□□□□ 0.53
VMP1-210ENST00000589823 FLT4P35916 1363 aa18.39■□□□□ 0.53
VMP1-210ENST00000589823 ABCC6O95255 1503 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms