RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 TMPOP42166 694 aaKnown RBP18.55■□□□□ 0.56
CIITA-204ENST00000570546 AIMP1Q12904 312 aaKnown RBP18.55■□□□□ 0.56
CIITA-204ENST00000570546 SULT6B1Q6IMI4 303 aa18.55■□□□□ 0.56
CIITA-204ENST00000570546 TXNDC2Q86VQ3 553 aa18.55■□□□□ 0.56
CIITA-204ENST00000570546 GRIN2AQ12879 1464 aa18.54■□□□□ 0.56
CIITA-204ENST00000570546 SLC52A1Q9NWF4 448 aa18.54■□□□□ 0.56
CIITA-204ENST00000570546 THOC2Q8NI27 1593 aaKnown RBP18.54■□□□□ 0.56
CIITA-204ENST00000570546 URB2Q14146 1524 aaKnown RBP18.54■□□□□ 0.56
CIITA-204ENST00000570546 CLSTN1O94985 981 aa18.54■□□□□ 0.56
CIITA-204ENST00000570546 AKAP17AQ02040 695 aaKnown RBP18.54■□□□□ 0.56
CIITA-204ENST00000570546 CCDC173Q0VFZ6 552 aa18.54■□□□□ 0.56
CIITA-204ENST00000570546 TRIM29Q14134 588 aa18.54■□□□□ 0.56
CIITA-204ENST00000570546 TPD52L1Q16890 204 aaPredicted RBP18.54■□□□□ 0.56
CIITA-204ENST00000570546 GOLGA6L1Q8N7Z2 621 aa18.54■□□□□ 0.56
CIITA-204ENST00000570546 UGGT2Q9NYU1 1516 aa18.54■□□□□ 0.56
CIITA-204ENST00000570546 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.53■□□□□ 0.56
CIITA-204ENST00000570546 RARSP54136 660 aaKnown RBP18.53■□□□□ 0.56
CIITA-204ENST00000570546 TMEM57Q8N5G2 664 aa18.53■□□□□ 0.56
CIITA-204ENST00000570546 CWC22Q9HCG8 908 aaKnown RBP18.53■□□□□ 0.56
CIITA-204ENST00000570546 FCHSD2O94868 740 aa18.53■□□□□ 0.56
CIITA-204ENST00000570546 PSMA5P28066 241 aa18.53■□□□□ 0.56
CIITA-204ENST00000570546 R3HCC1Q9Y3T6 440 aaKnown RBP18.53■□□□□ 0.56
CIITA-204ENST00000570546 CCT4P50991 539 aaKnown RBP18.53■□□□□ 0.56
CIITA-204ENST00000570546 CLASRPQ8N2M8 674 aaKnown RBP18.53■□□□□ 0.56
CIITA-204ENST00000570546 FOSBP53539 338 aa18.52■□□□□ 0.56
CIITA-204ENST00000570546 RTEL1-TNFRSF6BF6WH68 1400 aa18.52■□□□□ 0.56
CIITA-204ENST00000570546 MCM4P33991 863 aa18.52■□□□□ 0.56
CIITA-204ENST00000570546 TSPY26PQ9H489 355 aa18.52■□□□□ 0.55
CIITA-204ENST00000570546 CCDC27Q2M243 656 aa18.52■□□□□ 0.55
CIITA-204ENST00000570546 DUSP27Q5VZP5 1158 aa18.52■□□□□ 0.55
CIITA-204ENST00000570546 DISP3Q9P2K9 1392 aa18.51■□□□□ 0.55
CIITA-204ENST00000570546 LETM1O95202 739 aaPredicted RBP18.51■□□□□ 0.55
CIITA-204ENST00000570546 APPP05067 770 aa18.51■□□□□ 0.55
CIITA-204ENST00000570546 GRPEL1Q9HAV7 217 aa18.51■□□□□ 0.55
CIITA-204ENST00000570546 LRPPRCP42704 1394 aaKnown RBP18.51■□□□□ 0.55
CIITA-204ENST00000570546 ZNF692Q9BU19 519 aaPredicted RBP18.51■□□□□ 0.55
CIITA-204ENST00000570546 GTF2E1P29083 439 aaPredicted RBP18.51■□□□□ 0.55
CIITA-204ENST00000570546 CCDC73Q6ZRK6 1079 aa18.51■□□□□ 0.55
CIITA-204ENST00000570546 ZNF428Q96B54 188 aa18.51■□□□□ 0.55
CIITA-204ENST00000570546 RAPGEF4Q8WZA2 1011 aa18.5■□□□□ 0.55
CIITA-204ENST00000570546 FSD1Q9BTV5 496 aa18.5■□□□□ 0.55
CIITA-204ENST00000570546 EVA1CP58658 441 aa18.5■□□□□ 0.55
CIITA-204ENST00000570546 LRRCC1Q9C099 1032 aa18.5■□□□□ 0.55
CIITA-204ENST00000570546 TRDNQ13061 729 aa18.5■□□□□ 0.55
CIITA-204ENST00000570546 CIZ1Q9ULV3 898 aaPredicted RBP18.5■□□□□ 0.55
CIITA-204ENST00000570546 PES1O00541 588 aaKnown RBP18.49■□□□□ 0.55
CIITA-204ENST00000570546 NOC3LQ8WTT2 800 aaKnown RBP18.49■□□□□ 0.55
CIITA-204ENST00000570546 NFE2L2Q16236 605 aa18.49■□□□□ 0.55
CIITA-204ENST00000570546 FAM135AQ9P2D6 1515 aa18.49■□□□□ 0.55
CIITA-204ENST00000570546 NEUROD6Q96NK8 337 aa18.48■□□□□ 0.55
CIITA-204ENST00000570546 FBXW7Q969H0 707 aa18.48■□□□□ 0.55
CIITA-204ENST00000570546 ABTB2Q8N961 1025 aa18.48■□□□□ 0.55
CIITA-204ENST00000570546 IFT57Q9NWB7 429 aa18.48■□□□□ 0.55
CIITA-204ENST00000570546 CCAR2Q8N163 923 aaKnown RBP18.48■□□□□ 0.55
CIITA-204ENST00000570546 SCAF11Q99590 1463 aaKnown RBP18.47■□□□□ 0.55
CIITA-204ENST00000570546 TPM1P09493 284 aa18.47■□□□□ 0.55
CIITA-204ENST00000570546 RRS1Q15050 365 aaKnown RBP18.47■□□□□ 0.55
CIITA-204ENST00000570546 GPRASP1Q5JY77 1395 aa18.46■□□□□ 0.55
CIITA-204ENST00000570546 TNNT3P45378 269 aaPredicted RBP18.46■□□□□ 0.55
CIITA-204ENST00000570546 RALGAPBQ86X10 1494 aa18.46■□□□□ 0.55
CIITA-204ENST00000570546 TSR1Q2NL82 804 aaKnown RBP18.46■□□□□ 0.55
CIITA-204ENST00000570546 NFXL1Q6ZNB6 911 aa18.46■□□□□ 0.55
CIITA-204ENST00000570546 HIP1O00291 1037 aa18.45■□□□□ 0.54
CIITA-204ENST00000570546 TPM2P07951 284 aa18.45■□□□□ 0.54
CIITA-204ENST00000570546 SSH1Q8WYL5 1049 aa18.45■□□□□ 0.54
CIITA-204ENST00000570546 HDGFL1Q5TGJ6 251 aa18.45■□□□□ 0.54
CIITA-204ENST00000570546 ERC1Q8IUD2 1116 aa18.45■□□□□ 0.54
CIITA-204ENST00000570546 HOOK1Q9UJC3 728 aaKnown RBP18.45■□□□□ 0.54
CIITA-204ENST00000570546 CFAP43Q8NDM7 1665 aa18.45■□□□□ 0.54
CIITA-204ENST00000570546 HOMER1Q86YM7 354 aa18.45■□□□□ 0.54
CIITA-204ENST00000570546 GPATCH8Q9UKJ3 1502 aaKnown RBP18.44■□□□□ 0.54
CIITA-204ENST00000570546 PLEKHO1Q53GL0 409 aaPredicted RBP18.44■□□□□ 0.54
CIITA-204ENST00000570546 NLRP2Q9NX02 1062 aa18.44■□□□□ 0.54
CIITA-204ENST00000570546 ADGRF5Q8IZF2 1346 aa18.44■□□□□ 0.54
CIITA-204ENST00000570546 RAPGEF3O95398 923 aa18.44■□□□□ 0.54
CIITA-204ENST00000570546 TMX4Q9H1E5 349 aaPredicted RBP18.44■□□□□ 0.54
CIITA-204ENST00000570546 ABCC11Q96J66 1382 aa18.43■□□□□ 0.54
CIITA-204ENST00000570546 RPAP2Q8IXW5 612 aaPredicted RBP18.43■□□□□ 0.54
CIITA-204ENST00000570546 FIBPO43427 364 aa18.43■□□□□ 0.54
CIITA-204ENST00000570546 ALDH1L2Q3SY69 923 aa18.43■□□□□ 0.54
CIITA-204ENST00000570546 WASHC4Q2M389 1173 aa18.43■□□□□ 0.54
CIITA-204ENST00000570546 MARCH6O60337 910 aa18.42■□□□□ 0.54
CIITA-204ENST00000570546 RALYLQ86SE5 291 aaKnown RBP18.42■□□□□ 0.54
CIITA-204ENST00000570546 A0A0U1RQG5 324 aaPredicted RBP18.42■□□□□ 0.54
CIITA-204ENST00000570546 ZNF771Q7L3S4 317 aaPredicted RBP18.42■□□□□ 0.54
CIITA-204ENST00000570546 PDCP20941 246 aa18.42■□□□□ 0.54
CIITA-204ENST00000570546 SRCIN1Q9C0H9 1055 aa18.42■□□□□ 0.54
CIITA-204ENST00000570546 THUMPD2Q9BTF0 503 aaKnown RBP18.42■□□□□ 0.54
CIITA-204ENST00000570546 WDR33Q9C0J8 1336 aaKnown RBP18.41■□□□□ 0.54
CIITA-204ENST00000570546 MAP4K4O95819 1239 aaPredicted RBP18.41■□□□□ 0.54
CIITA-204ENST00000570546 DNAJC2Q99543 621 aaKnown RBP18.41■□□□□ 0.54
CIITA-204ENST00000570546 NAT10Q9H0A0 1025 aaKnown RBP18.41■□□□□ 0.54
CIITA-204ENST00000570546 CTTNBP2Q8WZ74 1663 aa18.41■□□□□ 0.54
CIITA-204ENST00000570546 ANO8Q9HCE9 1232 aaPredicted RBP18.41■□□□□ 0.54
CIITA-204ENST00000570546 RAPGEF6Q8TEU7 1601 aa18.4■□□□□ 0.54
CIITA-204ENST00000570546 CYP46A1Q9Y6A2 500 aa18.4■□□□□ 0.54
CIITA-204ENST00000570546 ERICH2A1L162 156 aa18.39■□□□□ 0.54
CIITA-204ENST00000570546 TCOF1Q13428 1488 aaKnown RBP18.39■□□□□ 0.53
CIITA-204ENST00000570546 TRIM5Q9C035 493 aa18.39■□□□□ 0.53
CIITA-204ENST00000570546 IGHDP01880 384 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms