RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 RICTORQ6R327 1708 aa17.23■□□□□ 0.35
CLK3-215ENST00000564353 MYO3AQ8NEV4 1616 aa17.23■□□□□ 0.35
CLK3-215ENST00000564353 TRIM27P14373 513 aa17.23■□□□□ 0.35
CLK3-215ENST00000564353 ZKSCAN2Q63HK3 967 aa17.23■□□□□ 0.35
CLK3-215ENST00000564353 DZIP1LQ8IYY4 767 aaKnown RBP17.23■□□□□ 0.35
CLK3-215ENST00000564353 NGEFQ8N5V2 710 aa17.23■□□□□ 0.35
CLK3-215ENST00000564353 NOB1Q9ULX3 412 aaKnown RBP17.23■□□□□ 0.35
CLK3-215ENST00000564353 NEURL4Q96JN8 1562 aa17.22■□□□□ 0.35
CLK3-215ENST00000564353 MVPQ14764 893 aaKnown RBP17.22■□□□□ 0.35
CLK3-215ENST00000564353 PLEKHF1Q96S99 279 aa17.22■□□□□ 0.35
CLK3-215ENST00000564353 PODXL2Q9NZ53 605 aa17.22■□□□□ 0.35
CLK3-215ENST00000564353 CAMSAP1Q5T5Y3 1602 aa17.21■□□□□ 0.35
CLK3-215ENST00000564353 TERF2IPQ9NYB0 399 aa17.21■□□□□ 0.35
CLK3-215ENST00000564353 PMFBP1Q8TBY8 1022 aa17.21■□□□□ 0.35
CLK3-215ENST00000564353 NEXMIFQ5QGS0 1516 aa17.21■□□□□ 0.35
CLK3-215ENST00000564353 DIAPH1O60610 1272 aaKnown RBP17.2■□□□□ 0.34
CLK3-215ENST00000564353 BRPF3Q9ULD4 1205 aa17.2■□□□□ 0.34
CLK3-215ENST00000564353 NUTM2FA1L443 756 aa17.2■□□□□ 0.34
CLK3-215ENST00000564353 ARXQ96QS3 562 aa17.2■□□□□ 0.34
CLK3-215ENST00000564353 SLC52A1Q9NWF4 448 aa17.2■□□□□ 0.34
CLK3-215ENST00000564353 USP35Q9P2H5 1018 aa17.2■□□□□ 0.34
CLK3-215ENST00000564353 RWDD1Q9H446 243 aaPredicted RBP17.19■□□□□ 0.34
CLK3-215ENST00000564353 PRKAR2BP31323 418 aa17.19■□□□□ 0.34
CLK3-215ENST00000564353 HDGFL2Q7Z4V5 671 aaPredicted RBP17.19■□□□□ 0.34
CLK3-215ENST00000564353 TMEM57Q8N5G2 664 aa17.19■□□□□ 0.34
CLK3-215ENST00000564353 PLPPR3Q6T4P5 718 aa17.18■□□□□ 0.34
CLK3-215ENST00000564353 MFAP1P55081 439 aaKnown RBP17.18■□□□□ 0.34
CLK3-215ENST00000564353 GSE1Q14687 1217 aa17.18■□□□□ 0.34
CLK3-215ENST00000564353 CCDC27Q2M243 656 aa17.18■□□□□ 0.34
CLK3-215ENST00000564353 PHACTR3Q96KR7 559 aa17.18■□□□□ 0.34
CLK3-215ENST00000564353 EMILIN1Q9Y6C2 1016 aa17.18■□□□□ 0.34
CLK3-215ENST00000564353 ABCC11Q96J66 1382 aa17.18■□□□□ 0.34
CLK3-215ENST00000564353 C1orf115Q9H7X2 142 aa17.17■□□□□ 0.34
CLK3-215ENST00000564353 ZC3H13Q5T200 1668 aaKnown RBP17.17■□□□□ 0.34
CLK3-215ENST00000564353 DIP2BQ9P265 1576 aa17.16■□□□□ 0.34
CLK3-215ENST00000564353 YTHDC2Q9H6S0 1430 aaKnown RBP17.16■□□□□ 0.34
CLK3-215ENST00000564353 ARHGEF28Q8N1W1 1705 aaKnown RBP17.16■□□□□ 0.34
CLK3-215ENST00000564353 SOX12O15370 315 aa17.16■□□□□ 0.34
CLK3-215ENST00000564353 TXNDC2Q86VQ3 553 aa17.16■□□□□ 0.34
CLK3-215ENST00000564353 RRS1Q15050 365 aaKnown RBP17.15■□□□□ 0.34
CLK3-215ENST00000564353 NME9Q86XW9 330 aa17.15■□□□□ 0.34
CLK3-215ENST00000564353 PIK3C2BO00750 1634 aa17.15■□□□□ 0.34
CLK3-215ENST00000564353 ATF7IPQ6VMQ6 1270 aa17.14■□□□□ 0.33
CLK3-215ENST00000564353 NINLQ9Y2I6 1382 aa17.13■□□□□ 0.33
CLK3-215ENST00000564353 TSPYL6Q8N831 410 aa17.13■□□□□ 0.33
CLK3-215ENST00000564353 POLKQ9UBT6 870 aa17.13■□□□□ 0.33
CLK3-215ENST00000564353 DCTN1Q14203 1278 aa17.12■□□□□ 0.33
CLK3-215ENST00000564353 LNPKQ9C0E8 428 aa17.12■□□□□ 0.33
CLK3-215ENST00000564353 UPF2Q9HAU5 1272 aaKnown RBP17.12■□□□□ 0.33
CLK3-215ENST00000564353 PTPRMP28827 1452 aa17.12■□□□□ 0.33
CLK3-215ENST00000564353 FAM83GA6ND36 823 aa17.12■□□□□ 0.33
CLK3-215ENST00000564353 MYO5BQ9ULV0 1848 aa17.12■□□□□ 0.33
CLK3-215ENST00000564353 NSD2O96028 1365 aa17.12■□□□□ 0.33
CLK3-215ENST00000564353 CD163L1Q9NR16 1453 aa17.12■□□□□ 0.33
CLK3-215ENST00000564353 ARHGAP31Q2M1Z3 1444 aa17.11■□□□□ 0.33
CLK3-215ENST00000564353 ATAD2Q6PL18 1390 aa17.11■□□□□ 0.33
CLK3-215ENST00000564353 TBC1D2Q9BYX2 928 aa17.1■□□□□ 0.33
CLK3-215ENST00000564353 BECN1Q14457 450 aa17.08■□□□□ 0.32
CLK3-215ENST00000564353 TBC1D32Q96NH3 1257 aa17.08■□□□□ 0.32
CLK3-215ENST00000564353 PUS7Q96PZ0 661 aaKnown RBP17.08■□□□□ 0.32
CLK3-215ENST00000564353 RSPH6AQ9H0K4 717 aa17.08■□□□□ 0.32
CLK3-215ENST00000564353 DDX19BQ9UMR2 479 aa17.08■□□□□ 0.32
CLK3-215ENST00000564353 COL3A1P02461 1466 aaPredicted RBP17.06■□□□□ 0.32
CLK3-215ENST00000564353 NLRP1Q9C000 1473 aa17.05■□□□□ 0.32
CLK3-215ENST00000564353 KRT24Q2M2I5 525 aa17.05■□□□□ 0.32
CLK3-215ENST00000564353 ZBTB40Q9NUA8 1239 aa17.05■□□□□ 0.32
CLK3-215ENST00000564353 C22orf23Q9BZE7 217 aa17.04■□□□□ 0.32
CLK3-215ENST00000564353 FCHSD2O94868 740 aa17.04■□□□□ 0.32
CLK3-215ENST00000564353 GZF1Q9H116 711 aaPredicted RBP17.04■□□□□ 0.32
CLK3-215ENST00000564353 TMEM131LA2VDJ0 1609 aa17.03■□□□□ 0.32
CLK3-215ENST00000564353 ANKRD45Q5TZF3 282 aa17.03■□□□□ 0.32
CLK3-215ENST00000564353 PREX1Q8TCU6 1659 aa17.03■□□□□ 0.32
CLK3-215ENST00000564353 USP32Q8NFA0 1604 aa17.03■□□□□ 0.32
CLK3-215ENST00000564353 ALKQ9UM73 1620 aa17.03■□□□□ 0.32
CLK3-215ENST00000564353 AEBP1Q8IUX7 1158 aa17.02■□□□□ 0.32
CLK3-215ENST00000564353 MBIPQ9NS73 344 aa17.02■□□□□ 0.32
CLK3-215ENST00000564353 METP08581 1390 aa17.02■□□□□ 0.32
CLK3-215ENST00000564353 FOXD4L1Q9NU39 408 aa17.02■□□□□ 0.32
CLK3-215ENST00000564353 C8orf58Q8NAV2 365 aa17.02■□□□□ 0.31
CLK3-215ENST00000564353 ADGRB2O60241 1585 aa17.01■□□□□ 0.31
CLK3-215ENST00000564353 APBB1O00213 710 aa17.01■□□□□ 0.31
CLK3-215ENST00000564353 NUDT16Q96DE0 195 aaKnown RBP17.01■□□□□ 0.31
CLK3-215ENST00000564353 ARHGEF40Q8TER5 1519 aa17.01■□□□□ 0.31
CLK3-215ENST00000564353 IPO8O15397 1037 aaKnown RBP17.01■□□□□ 0.31
CLK3-215ENST00000564353 NFE2L2Q16236 605 aa17.01■□□□□ 0.31
CLK3-215ENST00000564353 ESF1Q9H501 851 aaKnown RBP17.01■□□□□ 0.31
CLK3-215ENST00000564353 WASLO00401 505 aaPredicted RBP17■□□□□ 0.31
CLK3-215ENST00000564353 VAMP4O75379 141 aa17■□□□□ 0.31
CLK3-215ENST00000564353 HDAC1Q13547 482 aaPredicted RBP17■□□□□ 0.31
CLK3-215ENST00000564353 ZFYVE9O95405 1425 aa17■□□□□ 0.31
CLK3-215ENST00000564353 LRRC7Q96NW7 1537 aa17■□□□□ 0.31
CLK3-215ENST00000564353 KIF16BQ96L93 1317 aa16.99■□□□□ 0.31
CLK3-215ENST00000564353 PPIP5K1Q6PFW1 1433 aa16.99■□□□□ 0.31
CLK3-215ENST00000564353 RIMS2Q9UQ26 1411 aa16.99■□□□□ 0.31
CLK3-215ENST00000564353 IL13P35225 146 aa16.99■□□□□ 0.31
CLK3-215ENST00000564353 COG3Q96JB2 828 aa16.99■□□□□ 0.31
CLK3-215ENST00000564353 CT47B1P0C2W7 299 aaPredicted RBP16.98■□□□□ 0.31
CLK3-215ENST00000564353 ANTXR1Q9H6X2 564 aa16.98■□□□□ 0.31
CLK3-215ENST00000564353 PNPLA6Q8IY17 1366 aa16.98■□□□□ 0.31
CLK3-215ENST00000564353 AAMPQ13685 434 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms