RNA–Protein interactions for RNA: ENST00000559819.5

LRRC28-216, Transcript of leucine rich repeat containing 28, humanhuman

TSL 2

Gene LRRC28, Length 2,712 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-216ENST00000559819 EXOSC9Q06265 439 aaKnown RBP12.91□□□□□ -0.34
LRRC28-216ENST00000559819 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.9□□□□□ -0.34
LRRC28-216ENST00000559819 SEC24BO95487 1268 aa12.9□□□□□ -0.34
LRRC28-216ENST00000559819 HDGFL2Q7Z4V5 671 aaPredicted RBP12.9□□□□□ -0.34
LRRC28-216ENST00000559819 MAPK8IP3Q9UPT6 1336 aa12.89□□□□□ -0.35
LRRC28-216ENST00000559819 ARHGEF40Q8TER5 1519 aa12.89□□□□□ -0.35
LRRC28-216ENST00000559819 CLTCQ00610 1675 aaKnown RBP12.89□□□□□ -0.35
LRRC28-216ENST00000559819 TSPOAP1O95153 1857 aa12.89□□□□□ -0.35
LRRC28-216ENST00000559819 PPM1GO15355 546 aaPredicted RBP12.89□□□□□ -0.35
LRRC28-216ENST00000559819 USP19O94966 1318 aa12.88□□□□□ -0.35
LRRC28-216ENST00000559819 DIAPH1O60610 1272 aaKnown RBP12.88□□□□□ -0.35
LRRC28-216ENST00000559819 RIPK4P57078 832 aa12.88□□□□□ -0.35
LRRC28-216ENST00000559819 ZKSCAN2Q63HK3 967 aa12.88□□□□□ -0.35
LRRC28-216ENST00000559819 PMFBP1Q8TBY8 1022 aa12.88□□□□□ -0.35
LRRC28-216ENST00000559819 SMC4Q9NTJ3 1288 aa12.88□□□□□ -0.35
LRRC28-216ENST00000559819 PDZRN3Q9UPQ7 1066 aa12.88□□□□□ -0.35
LRRC28-216ENST00000559819 MVPQ14764 893 aaKnown RBP12.87□□□□□ -0.35
LRRC28-216ENST00000559819 NCBP3Q53F19 620 aaKnown RBP12.87□□□□□ -0.35
LRRC28-216ENST00000559819 DAXXQ9UER7 740 aaPredicted RBP12.87□□□□□ -0.35
LRRC28-216ENST00000559819 ANKRD26Q9UPS8 1709 aa12.87□□□□□ -0.35
LRRC28-216ENST00000559819 SSH1Q8WYL5 1049 aa12.87□□□□□ -0.35
LRRC28-216ENST00000559819 DIP2BQ9P265 1576 aa12.87□□□□□ -0.35
LRRC28-216ENST00000559819 A2ML1A8K2U0 1454 aa12.87□□□□□ -0.35
LRRC28-216ENST00000559819 MED14O60244 1454 aa12.87□□□□□ -0.35
LRRC28-216ENST00000559819 FTSJ3Q8IY81 847 aaKnown RBP12.86□□□□□ -0.35
LRRC28-216ENST00000559819 DZIP1LQ8IYY4 767 aaKnown RBP12.86□□□□□ -0.35
LRRC28-216ENST00000559819 RIMS2Q9UQ26 1411 aa12.86□□□□□ -0.35
LRRC28-216ENST00000559819 TRIM27P14373 513 aa12.84□□□□□ -0.35
LRRC28-216ENST00000559819 PNPLA6Q8IY17 1366 aa12.84□□□□□ -0.35
LRRC28-216ENST00000559819 POLKQ9UBT6 870 aa12.84□□□□□ -0.35
LRRC28-216ENST00000559819 ZRANB1Q9UGI0 708 aa12.84□□□□□ -0.35
LRRC28-216ENST00000559819 NOB1Q9ULX3 412 aaKnown RBP12.84□□□□□ -0.35
LRRC28-216ENST00000559819 PRKAR2BP31323 418 aa12.83□□□□□ -0.35
LRRC28-216ENST00000559819 NFKBIBQ15653 356 aa12.83□□□□□ -0.35
LRRC28-216ENST00000559819 RWDD1Q9H446 243 aaPredicted RBP12.83□□□□□ -0.35
LRRC28-216ENST00000559819 KIF20BQ96Q89 1820 aa12.83□□□□□ -0.36
LRRC28-216ENST00000559819 NCKAP5LQ9HCH0 1330 aa12.83□□□□□ -0.36
LRRC28-216ENST00000559819 HMOX1P09601 288 aa12.83□□□□□ -0.36
LRRC28-216ENST00000559819 USP35Q9P2H5 1018 aa12.83□□□□□ -0.36
LRRC28-216ENST00000559819 AAMPQ13685 434 aa12.82□□□□□ -0.36
LRRC28-216ENST00000559819 ITPRIPQ8IWB1 547 aa12.82□□□□□ -0.36
LRRC28-216ENST00000559819 LRRC7Q96NW7 1537 aa12.82□□□□□ -0.36
LRRC28-216ENST00000559819 VIRMAQ69YN4 1812 aaKnown RBP12.82□□□□□ -0.36
LRRC28-216ENST00000559819 CT47B1P0C2W7 299 aaPredicted RBP12.82□□□□□ -0.36
LRRC28-216ENST00000559819 EMILIN1Q9Y6C2 1016 aa12.82□□□□□ -0.36
LRRC28-216ENST00000559819 SPATA31D1Q6ZQQ2 1576 aa12.82□□□□□ -0.36
LRRC28-216ENST00000559819 PRKCSHP14314 528 aaPredicted RBP12.82□□□□□ -0.36
LRRC28-216ENST00000559819 TXNDC2Q86VQ3 553 aa12.82□□□□□ -0.36
LRRC28-216ENST00000559819 NME9Q86XW9 330 aa12.82□□□□□ -0.36
LRRC28-216ENST00000559819 THUMPD2Q9BTF0 503 aaKnown RBP12.82□□□□□ -0.36
LRRC28-216ENST00000559819 RSPH6AQ9H0K4 717 aa12.82□□□□□ -0.36
LRRC28-216ENST00000559819 METP08581 1390 aa12.81□□□□□ -0.36
LRRC28-216ENST00000559819 AGLP35573 1532 aa12.81□□□□□ -0.36
LRRC28-216ENST00000559819 TMEM57Q8N5G2 664 aa12.81□□□□□ -0.36
LRRC28-216ENST00000559819 PHACTR3Q96KR7 559 aa12.81□□□□□ -0.36
LRRC28-216ENST00000559819 SETD1AO15047 1707 aaKnown RBP12.81□□□□□ -0.36
LRRC28-216ENST00000559819 IL16Q14005 1332 aa12.81□□□□□ -0.36
LRRC28-216ENST00000559819 DLC1Q96QB1 1528 aa12.81□□□□□ -0.36
LRRC28-216ENST00000559819 ATF7IPQ6VMQ6 1270 aa12.81□□□□□ -0.36
LRRC28-216ENST00000559819 WASLO00401 505 aaPredicted RBP12.8□□□□□ -0.36
LRRC28-216ENST00000559819 FCHSD2O94868 740 aa12.8□□□□□ -0.36
LRRC28-216ENST00000559819 REREQ9P2R6 1566 aa12.79□□□□□ -0.36
LRRC28-216ENST00000559819 FAM135BQ49AJ0 1406 aa12.79□□□□□ -0.36
LRRC28-216ENST00000559819 PPIP5K1Q6PFW1 1433 aa12.79□□□□□ -0.36
LRRC28-216ENST00000559819 ATP7BP35670 1465 aa12.79□□□□□ -0.36
LRRC28-216ENST00000559819 NRXN3Q9Y4C0 1643 aa12.79□□□□□ -0.36
LRRC28-216ENST00000559819 PNNQ9H307 717 aaKnown RBP12.78□□□□□ -0.36
LRRC28-216ENST00000559819 PPP6R1Q9UPN7 881 aa12.78□□□□□ -0.36
LRRC28-216ENST00000559819 DDX19BQ9UMR2 479 aa12.78□□□□□ -0.36
LRRC28-216ENST00000559819 CDC42BPGQ6DT37 1551 aa12.78□□□□□ -0.36
LRRC28-216ENST00000559819 RRS1Q15050 365 aaKnown RBP12.77□□□□□ -0.37
LRRC28-216ENST00000559819 NUDT16Q96DE0 195 aaKnown RBP12.77□□□□□ -0.37
LRRC28-216ENST00000559819 CPSF1Q10570 1443 aaKnown RBP12.76□□□□□ -0.37
LRRC28-216ENST00000559819 FRAT2O75474 233 aaPredicted RBP12.76□□□□□ -0.37
LRRC28-216ENST00000559819 IL13P35225 146 aa12.76□□□□□ -0.37
LRRC28-216ENST00000559819 NFE2L2Q16236 605 aa12.76□□□□□ -0.37
LRRC28-216ENST00000559819 CPS1P31327 1500 aa12.76□□□□□ -0.37
LRRC28-216ENST00000559819 ZMYM3Q14202 1370 aa12.76□□□□□ -0.37
LRRC28-216ENST00000559819 EDC4Q6P2E9 1401 aaKnown RBP12.75□□□□□ -0.37
LRRC28-216ENST00000559819 ELL2O00472 640 aaPredicted RBP12.75□□□□□ -0.37
LRRC28-216ENST00000559819 HDAC1Q13547 482 aaPredicted RBP12.75□□□□□ -0.37
LRRC28-216ENST00000559819 TSPYL6Q8N831 410 aa12.75□□□□□ -0.37
LRRC28-216ENST00000559819 MAP2P11137 1827 aaKnown RBP12.75□□□□□ -0.37
LRRC28-216ENST00000559819 KIF16BQ96L93 1317 aa12.75□□□□□ -0.37
LRRC28-216ENST00000559819 ESF1Q9H501 851 aaKnown RBP12.75□□□□□ -0.37
LRRC28-216ENST00000559819 ZBTB40Q9NUA8 1239 aa12.75□□□□□ -0.37
LRRC28-216ENST00000559819 TBC1D32Q96NH3 1257 aa12.74□□□□□ -0.37
LRRC28-216ENST00000559819 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.74□□□□□ -0.37
LRRC28-216ENST00000559819 SLKQ9H2G2 1235 aaPredicted RBP12.74□□□□□ -0.37
LRRC28-216ENST00000559819 PRR36Q9H6K5 1346 aa12.73□□□□□ -0.37
LRRC28-216ENST00000559819 IPO8O15397 1037 aaKnown RBP12.73□□□□□ -0.37
LRRC28-216ENST00000559819 ALDH1L2Q3SY69 923 aa12.73□□□□□ -0.37
LRRC28-216ENST00000559819 COG3Q96JB2 828 aa12.73□□□□□ -0.37
LRRC28-216ENST00000559819 NUTM2FA1L443 756 aa12.73□□□□□ -0.37
LRRC28-216ENST00000559819 FAM83GA6ND36 823 aa12.73□□□□□ -0.37
LRRC28-216ENST00000559819 VAMP4O75379 141 aa12.73□□□□□ -0.37
LRRC28-216ENST00000559819 UPF2Q9HAU5 1272 aaKnown RBP12.73□□□□□ -0.37
LRRC28-216ENST00000559819 SMC5Q8IY18 1101 aa12.72□□□□□ -0.37
LRRC28-216ENST00000559819 MRPL50Q8N5N7 158 aaKnown RBP12.72□□□□□ -0.37
LRRC28-216ENST00000559819 C1orf115Q9H7X2 142 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms