RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 KIF1AQ12756 1690 aa9.27□□□□□ -0.93
TMEM260-209ENST00000556079 PMFBP1Q8TBY8 1022 aa9.27□□□□□ -0.93
TMEM260-209ENST00000556079 ABCA3Q99758 1704 aa9.27□□□□□ -0.93
TMEM260-209ENST00000556079 QRICH2Q9H0J4 1663 aa9.26□□□□□ -0.93
TMEM260-209ENST00000556079 ATAD2Q6PL18 1390 aa9.26□□□□□ -0.93
TMEM260-209ENST00000556079 TRPM3Q9HCF6 1732 aaPredicted RBP9.26□□□□□ -0.93
TMEM260-209ENST00000556079 NBPF8Q3BBV2 869 aa9.26□□□□□ -0.93
TMEM260-209ENST00000556079 FNBP4Q8N3X1 1017 aaPredicted RBP9.26□□□□□ -0.93
TMEM260-209ENST00000556079 TRPC5Q9UL62 973 aaPredicted RBP9.26□□□□□ -0.93
TMEM260-209ENST00000556079 TRIM26Q12899 539 aaPredicted RBP9.25□□□□□ -0.93
TMEM260-209ENST00000556079 PIP4P2Q8N4L2 257 aa9.25□□□□□ -0.93
TMEM260-209ENST00000556079 CABLES1Q8TDN4 633 aa9.25□□□□□ -0.93
TMEM260-209ENST00000556079 SIRT1Q96EB6 747 aa9.25□□□□□ -0.93
TMEM260-209ENST00000556079 MARF1Q9Y4F3 1742 aaKnown RBP9.25□□□□□ -0.93
TMEM260-209ENST00000556079 ATRNO75882 1429 aa9.24□□□□□ -0.93
TMEM260-209ENST00000556079 TOPAZ1Q8N9V7 1692 aa9.24□□□□□ -0.93
TMEM260-209ENST00000556079 ATP7BP35670 1465 aa9.24□□□□□ -0.93
TMEM260-209ENST00000556079 PHF8Q9UPP1 1060 aa9.24□□□□□ -0.93
TMEM260-209ENST00000556079 TULP4Q9NRJ4 1543 aa9.24□□□□□ -0.93
TMEM260-209ENST00000556079 KRT28Q7Z3Y7 464 aa9.23□□□□□ -0.93
TMEM260-209ENST00000556079 SPDYE1Q8NFV5 336 aaPredicted RBP9.23□□□□□ -0.93
TMEM260-209ENST00000556079 NPHP3Q7Z494 1330 aa9.23□□□□□ -0.93
TMEM260-209ENST00000556079 ALS2Q96Q42 1657 aa9.23□□□□□ -0.93
TMEM260-209ENST00000556079 BCL9LQ86UU0 1499 aa9.22□□□□□ -0.93
TMEM260-209ENST00000556079 WASLO00401 505 aaPredicted RBP9.22□□□□□ -0.93
TMEM260-209ENST00000556079 ZRANB1Q9UGI0 708 aa9.22□□□□□ -0.93
TMEM260-209ENST00000556079 SPATA31A3Q5VYP0 1347 aa9.22□□□□□ -0.93
TMEM260-209ENST00000556079 CRYBG1Q9Y4K1 1723 aa9.22□□□□□ -0.93
TMEM260-209ENST00000556079 TNS3Q68CZ2 1445 aa9.22□□□□□ -0.93
TMEM260-209ENST00000556079 ANKARQ7Z5J8 1434 aa9.22□□□□□ -0.93
TMEM260-209ENST00000556079 LMOD2Q6P5Q4 547 aa9.21□□□□□ -0.94
TMEM260-209ENST00000556079 CDK19Q9BWU1 502 aa9.21□□□□□ -0.94
TMEM260-209ENST00000556079 ITSN1Q15811 1721 aa9.21□□□□□ -0.94
TMEM260-209ENST00000556079 PLCH1Q4KWH8 1693 aa9.2□□□□□ -0.94
TMEM260-209ENST00000556079 NUDT16Q96DE0 195 aaKnown RBP9.2□□□□□ -0.94
TMEM260-209ENST00000556079 GJD4Q96KN9 370 aaPredicted RBP9.2□□□□□ -0.94
TMEM260-209ENST00000556079 CABP2Q9NPB3 220 aa9.2□□□□□ -0.94
TMEM260-209ENST00000556079 FXR2P51116 673 aaKnown RBP eCLIP9.19□□□□□ -0.94
TMEM260-209ENST00000556079 NUTM2GQ5VZR2 741 aa9.19□□□□□ -0.94
TMEM260-209ENST00000556079 ROCK2O75116 1388 aaKnown RBP9.18□□□□□ -0.94
TMEM260-209ENST00000556079 PSME1Q06323 249 aa9.18□□□□□ -0.94
TMEM260-209ENST00000556079 DEFB132Q7Z7B7 95 aa9.18□□□□□ -0.94
TMEM260-209ENST00000556079 PCGF6Q9BYE7 350 aa9.18□□□□□ -0.94
TMEM260-209ENST00000556079 CENPJQ9HC77 1338 aaPredicted RBP9.18□□□□□ -0.94
TMEM260-209ENST00000556079 PHRF1Q9P1Y6 1649 aaKnown RBP9.17□□□□□ -0.94
TMEM260-209ENST00000556079 RALGAPBQ86X10 1494 aa9.17□□□□□ -0.94
TMEM260-209ENST00000556079 UNC5CLQ8IV45 518 aa9.17□□□□□ -0.94
TMEM260-209ENST00000556079 NGDNQ8NEJ9 315 aaKnown RBP9.17□□□□□ -0.94
TMEM260-209ENST00000556079 NRAPQ86VF7 1730 aa9.17□□□□□ -0.94
TMEM260-209ENST00000556079 GLI3P10071 1580 aa9.16□□□□□ -0.94
TMEM260-209ENST00000556079 SBNO1A3KN83 1393 aa9.16□□□□□ -0.94
TMEM260-209ENST00000556079 TONSLQ96HA7 1378 aa9.16□□□□□ -0.94
TMEM260-209ENST00000556079 ACEP12821 1306 aa9.16□□□□□ -0.94
TMEM260-209ENST00000556079 SPDYE4A6NLX3 237 aa9.16□□□□□ -0.94
TMEM260-209ENST00000556079 PAK3O75914 559 aaPredicted RBP9.16□□□□□ -0.94
TMEM260-209ENST00000556079 CCDC125Q86Z20 511 aa9.16□□□□□ -0.94
TMEM260-209ENST00000556079 STAC3Q96MF2 364 aa9.16□□□□□ -0.94
TMEM260-209ENST00000556079 BRWD3Q6RI45 1802 aa9.16□□□□□ -0.94
TMEM260-209ENST00000556079 SLIT2O94813 1529 aa9.15□□□□□ -0.94
TMEM260-209ENST00000556079 PPIP5K1Q6PFW1 1433 aa9.15□□□□□ -0.94
TMEM260-209ENST00000556079 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.15□□□□□ -0.94
TMEM260-209ENST00000556079 SRPK2P78362 688 aaKnown RBP9.15□□□□□ -0.94
TMEM260-209ENST00000556079 BLMP54132 1417 aaPredicted RBP9.14□□□□□ -0.95
TMEM260-209ENST00000556079 EIF3AQ14152 1382 aaKnown RBP9.14□□□□□ -0.95
TMEM260-209ENST00000556079 GPRASP1Q5JY77 1395 aa9.14□□□□□ -0.95
TMEM260-209ENST00000556079 SEPT12Q8IYM1 358 aa9.14□□□□□ -0.95
TMEM260-209ENST00000556079 AKAP12Q02952 1782 aa9.14□□□□□ -0.95
TMEM260-209ENST00000556079 PIK3C2AO00443 1686 aa9.13□□□□□ -0.95
TMEM260-209ENST00000556079 POLR3AO14802 1390 aaPredicted RBP9.13□□□□□ -0.95
TMEM260-209ENST00000556079 NRKQ7Z2Y5 1582 aa9.13□□□□□ -0.95
TMEM260-209ENST00000556079 FAM83GA6ND36 823 aa9.13□□□□□ -0.95
TMEM260-209ENST00000556079 HAP1P54257 671 aaPredicted RBP9.13□□□□□ -0.95
TMEM260-209ENST00000556079 CHRNA2Q15822 529 aa9.13□□□□□ -0.95
TMEM260-209ENST00000556079 CABP1Q9NZU7 370 aa9.13□□□□□ -0.95
TMEM260-209ENST00000556079 CCDC9Q9Y3X0 531 aaKnown RBP9.13□□□□□ -0.95
TMEM260-209ENST00000556079 ARHGEF10O15013 1369 aa9.12□□□□□ -0.95
TMEM260-209ENST00000556079 PRR29P0C7W0 189 aa9.12□□□□□ -0.95
TMEM260-209ENST00000556079 PRKAR2AP13861 404 aaKnown RBP9.12□□□□□ -0.95
TMEM260-209ENST00000556079 CARD11Q9BXL7 1154 aa9.12□□□□□ -0.95
TMEM260-209ENST00000556079 NWD2Q9ULI1 1742 aa9.11□□□□□ -0.95
TMEM260-209ENST00000556079 PLEKHG3A1L390 1219 aa9.11□□□□□ -0.95
TMEM260-209ENST00000556079 PSDA5PKW4 1024 aaPredicted RBP9.11□□□□□ -0.95
TMEM260-209ENST00000556079 ZC3H6P61129 1189 aaKnown RBP9.11□□□□□ -0.95
TMEM260-209ENST00000556079 VPS72Q15906 364 aa9.11□□□□□ -0.95
TMEM260-209ENST00000556079 CCDC61Q9Y6R9 512 aa9.11□□□□□ -0.95
TMEM260-209ENST00000556079 COL14A1Q05707 1796 aaKnown RBP9.11□□□□□ -0.95
TMEM260-209ENST00000556079 KIAA0232Q92628 1395 aa9.11□□□□□ -0.95
TMEM260-209ENST00000556079 A0A0G2JS52 829 aa9.1□□□□□ -0.95
TMEM260-209ENST00000556079 MYT1Q01538 1121 aa9.1□□□□□ -0.95
TMEM260-209ENST00000556079 SF3B2Q13435 895 aaKnown RBP9.1□□□□□ -0.95
TMEM260-209ENST00000556079 KRT27Q7Z3Y8 459 aa9.1□□□□□ -0.95
TMEM260-209ENST00000556079 USP6P35125 1406 aa9.1□□□□□ -0.95
TMEM260-209ENST00000556079 MON2Q7Z3U7 1717 aa9.1□□□□□ -0.95
TMEM260-209ENST00000556079 CD163L1Q9NR16 1453 aa9.09□□□□□ -0.95
TMEM260-209ENST00000556079 ZBTB7CA1YPR0 619 aa9.09□□□□□ -0.95
TMEM260-209ENST00000556079 ONECUT3O60422 494 aaPredicted RBP9.09□□□□□ -0.95
TMEM260-209ENST00000556079 FAM98CQ17RN3 349 aaKnown RBP9.09□□□□□ -0.95
TMEM260-209ENST00000556079 FAM182BQ5T319 152 aa9.09□□□□□ -0.95
TMEM260-209ENST00000556079 BTG4Q9NY30 223 aa9.09□□□□□ -0.95
TMEM260-209ENST00000556079 RGPD5Q99666 1765 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms