RNA–Protein interactions for RNA: ENST00000553882.1

ACTN1-211, Transcript of actinin alpha 1, humanhuman

TSL 2

Gene ACTN1, Length 2,636 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-211ENST00000553882 ADGRB2O60241 1585 aa18.64■□□□□ 0.57
ACTN1-211ENST00000553882 CD163L1Q9NR16 1453 aa18.64■□□□□ 0.57
ACTN1-211ENST00000553882 ZKSCAN2Q63HK3 967 aa18.64■□□□□ 0.57
ACTN1-211ENST00000553882 MVPQ14764 893 aaKnown RBP18.63■□□□□ 0.57
ACTN1-211ENST00000553882 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.63■□□□□ 0.57
ACTN1-211ENST00000553882 PDZRN3Q9UPQ7 1066 aa18.63■□□□□ 0.57
ACTN1-211ENST00000553882 HDGFL2Q7Z4V5 671 aaPredicted RBP18.62■□□□□ 0.57
ACTN1-211ENST00000553882 DZIP1LQ8IYY4 767 aaKnown RBP18.62■□□□□ 0.57
ACTN1-211ENST00000553882 RIPK4P57078 832 aa18.62■□□□□ 0.57
ACTN1-211ENST00000553882 WAPLQ7Z5K2 1190 aa18.61■□□□□ 0.57
ACTN1-211ENST00000553882 COL3A1P02461 1466 aaPredicted RBP18.61■□□□□ 0.57
ACTN1-211ENST00000553882 DIAPH1O60610 1272 aaKnown RBP18.61■□□□□ 0.57
ACTN1-211ENST00000553882 SSH1Q8WYL5 1049 aa18.61■□□□□ 0.57
ACTN1-211ENST00000553882 NLRP1Q9C000 1473 aa18.6■□□□□ 0.57
ACTN1-211ENST00000553882 TRIM27P14373 513 aa18.6■□□□□ 0.57
ACTN1-211ENST00000553882 RWDD1Q9H446 243 aaPredicted RBP18.6■□□□□ 0.57
ACTN1-211ENST00000553882 AAMPQ13685 434 aa18.59■□□□□ 0.57
ACTN1-211ENST00000553882 VIRMAQ69YN4 1812 aaKnown RBP18.59■□□□□ 0.57
ACTN1-211ENST00000553882 FAM69CQ0P6D2 419 aa18.59■□□□□ 0.57
ACTN1-211ENST00000553882 ITPRIPQ8IWB1 547 aa18.59■□□□□ 0.57
ACTN1-211ENST00000553882 ALKQ9UM73 1620 aa18.59■□□□□ 0.57
ACTN1-211ENST00000553882 MLECQ14165 292 aa18.58■□□□□ 0.57
ACTN1-211ENST00000553882 NCBP3Q53F19 620 aaKnown RBP18.58■□□□□ 0.57
ACTN1-211ENST00000553882 FRAT2O75474 233 aaPredicted RBP18.56■□□□□ 0.56
ACTN1-211ENST00000553882 NOB1Q9ULX3 412 aaKnown RBP18.56■□□□□ 0.56
ACTN1-211ENST00000553882 ARHGEF40Q8TER5 1519 aa18.56■□□□□ 0.56
ACTN1-211ENST00000553882 CT47B1P0C2W7 299 aaPredicted RBP18.55■□□□□ 0.56
ACTN1-211ENST00000553882 ATF7IPQ6VMQ6 1270 aa18.55■□□□□ 0.56
ACTN1-211ENST00000553882 PRKAR2BP31323 418 aa18.54■□□□□ 0.56
ACTN1-211ENST00000553882 HMOX1P09601 288 aa18.53■□□□□ 0.56
ACTN1-211ENST00000553882 CLTCQ00610 1675 aaKnown RBP18.53■□□□□ 0.56
ACTN1-211ENST00000553882 MED14O60244 1454 aa18.53■□□□□ 0.56
ACTN1-211ENST00000553882 ANKRD26Q9UPS8 1709 aa18.53■□□□□ 0.56
ACTN1-211ENST00000553882 TMEM57Q8N5G2 664 aa18.53■□□□□ 0.56
ACTN1-211ENST00000553882 SLKQ9H2G2 1235 aaPredicted RBP18.53■□□□□ 0.56
ACTN1-211ENST00000553882 POLKQ9UBT6 870 aa18.53■□□□□ 0.56
ACTN1-211ENST00000553882 PNPLA6Q8IY17 1366 aa18.52■□□□□ 0.56
ACTN1-211ENST00000553882 GSE1Q14687 1217 aa18.52■□□□□ 0.56
ACTN1-211ENST00000553882 UPF2Q9HAU5 1272 aaKnown RBP18.52■□□□□ 0.56
ACTN1-211ENST00000553882 TSPOAP1O95153 1857 aa18.52■□□□□ 0.55
ACTN1-211ENST00000553882 THUMPD2Q9BTF0 503 aaKnown RBP18.52■□□□□ 0.55
ACTN1-211ENST00000553882 DDX19BQ9UMR2 479 aa18.52■□□□□ 0.55
ACTN1-211ENST00000553882 IL27Q8NEV9 243 aa18.51■□□□□ 0.55
ACTN1-211ENST00000553882 IL16Q14005 1332 aa18.5■□□□□ 0.55
ACTN1-211ENST00000553882 FCHSD2O94868 740 aa18.5■□□□□ 0.55
ACTN1-211ENST00000553882 PHACTR3Q96KR7 559 aa18.5■□□□□ 0.55
ACTN1-211ENST00000553882 RSPH6AQ9H0K4 717 aa18.5■□□□□ 0.55
ACTN1-211ENST00000553882 EMILIN1Q9Y6C2 1016 aa18.5■□□□□ 0.55
ACTN1-211ENST00000553882 LRRC7Q96NW7 1537 aa18.5■□□□□ 0.55
ACTN1-211ENST00000553882 PNNQ9H307 717 aaKnown RBP18.5■□□□□ 0.55
ACTN1-211ENST00000553882 ZRANB1Q9UGI0 708 aa18.49■□□□□ 0.55
ACTN1-211ENST00000553882 BECN1Q14457 450 aa18.49■□□□□ 0.55
ACTN1-211ENST00000553882 NCKAP5LQ9HCH0 1330 aa18.49■□□□□ 0.55
ACTN1-211ENST00000553882 KIF20BQ96Q89 1820 aa18.48■□□□□ 0.55
ACTN1-211ENST00000553882 A2ML1A8K2U0 1454 aa18.48■□□□□ 0.55
ACTN1-211ENST00000553882 NME9Q86XW9 330 aa18.48■□□□□ 0.55
ACTN1-211ENST00000553882 TBC1D32Q96NH3 1257 aa18.48■□□□□ 0.55
ACTN1-211ENST00000553882 RIMS2Q9UQ26 1411 aa18.48■□□□□ 0.55
ACTN1-211ENST00000553882 TXNDC2Q86VQ3 553 aa18.47■□□□□ 0.55
ACTN1-211ENST00000553882 KIF16BQ96L93 1317 aa18.47■□□□□ 0.55
ACTN1-211ENST00000553882 ELL2O00472 640 aaPredicted RBP18.46■□□□□ 0.55
ACTN1-211ENST00000553882 HDAC1Q13547 482 aaPredicted RBP18.46■□□□□ 0.55
ACTN1-211ENST00000553882 ZBTB40Q9NUA8 1239 aa18.45■□□□□ 0.54
ACTN1-211ENST00000553882 IPO8O15397 1037 aaKnown RBP18.45■□□□□ 0.54
ACTN1-211ENST00000553882 FAM135BQ49AJ0 1406 aa18.44■□□□□ 0.54
ACTN1-211ENST00000553882 MFAP1P55081 439 aaKnown RBP18.44■□□□□ 0.54
ACTN1-211ENST00000553882 RTN4Q9NQC3 1192 aaKnown RBP18.44■□□□□ 0.54
ACTN1-211ENST00000553882 PPIP5K1Q6PFW1 1433 aa18.44■□□□□ 0.54
ACTN1-211ENST00000553882 METP08581 1390 aa18.43■□□□□ 0.54
ACTN1-211ENST00000553882 ZMYM3Q14202 1370 aa18.43■□□□□ 0.54
ACTN1-211ENST00000553882 WASLO00401 505 aaPredicted RBP18.43■□□□□ 0.54
ACTN1-211ENST00000553882 RRS1Q15050 365 aaKnown RBP18.43■□□□□ 0.54
ACTN1-211ENST00000553882 SPRYD3Q8NCJ5 442 aa18.43■□□□□ 0.54
ACTN1-211ENST00000553882 MAP2P11137 1827 aaKnown RBP18.43■□□□□ 0.54
ACTN1-211ENST00000553882 ATP7BP35670 1465 aa18.43■□□□□ 0.54
ACTN1-211ENST00000553882 NFE2L2Q16236 605 aa18.43■□□□□ 0.54
ACTN1-211ENST00000553882 TSPYL6Q8N831 410 aa18.43■□□□□ 0.54
ACTN1-211ENST00000553882 TBC1D2Q9BYX2 928 aa18.43■□□□□ 0.54
ACTN1-211ENST00000553882 ALDH1L2Q3SY69 923 aa18.41■□□□□ 0.54
ACTN1-211ENST00000553882 SMC5Q8IY18 1101 aa18.41■□□□□ 0.54
ACTN1-211ENST00000553882 DIP2BQ9P265 1576 aa18.41■□□□□ 0.54
ACTN1-211ENST00000553882 LNPKQ9C0E8 428 aa18.41■□□□□ 0.54
ACTN1-211ENST00000553882 C1orf115Q9H7X2 142 aa18.4■□□□□ 0.54
ACTN1-211ENST00000553882 BRPF3Q9ULD4 1205 aa18.4■□□□□ 0.54
ACTN1-211ENST00000553882 DLC1Q96QB1 1528 aa18.4■□□□□ 0.54
ACTN1-211ENST00000553882 IL13P35225 146 aa18.4■□□□□ 0.54
ACTN1-211ENST00000553882 NUDT16Q96DE0 195 aaKnown RBP18.4■□□□□ 0.54
ACTN1-211ENST00000553882 RIMBP3CA6NJZ7 1639 aa18.4■□□□□ 0.54
ACTN1-211ENST00000553882 RIMBP3BA6NNM3 1639 aa18.4■□□□□ 0.54
ACTN1-211ENST00000553882 RIMBP3Q9UFD9 1639 aa18.4■□□□□ 0.54
ACTN1-211ENST00000553882 CDC42BPGQ6DT37 1551 aa18.39■□□□□ 0.54
ACTN1-211ENST00000553882 C22orf23Q9BZE7 217 aa18.39■□□□□ 0.53
ACTN1-211ENST00000553882 PPP6R1Q9UPN7 881 aa18.39■□□□□ 0.53
ACTN1-211ENST00000553882 EDC4Q6P2E9 1401 aaKnown RBP18.39■□□□□ 0.53
ACTN1-211ENST00000553882 SPATA31D1Q6ZQQ2 1576 aa18.39■□□□□ 0.53
ACTN1-211ENST00000553882 SETD1AO15047 1707 aaKnown RBP18.38■□□□□ 0.53
ACTN1-211ENST00000553882 FAM83GA6ND36 823 aa18.38■□□□□ 0.53
ACTN1-211ENST00000553882 VAMP4O75379 141 aa18.38■□□□□ 0.53
ACTN1-211ENST00000553882 MBIPQ9NS73 344 aa18.38■□□□□ 0.53
ACTN1-211ENST00000553882 CPSF1Q10570 1443 aaKnown RBP18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms