RNA–Protein interactions for RNA: ENST00000553335.5

TMEM260-204, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 560 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-204ENST00000553335 MST1RQ04912 1400 aa13.46□□□□□ -0.26
TMEM260-204ENST00000553335 PPIP5K1Q6PFW1 1433 aa13.46□□□□□ -0.26
TMEM260-204ENST00000553335 PRR36Q9H6K5 1346 aa13.45□□□□□ -0.26
TMEM260-204ENST00000553335 C1orf167Q5SNV9 1468 aa13.45□□□□□ -0.26
TMEM260-204ENST00000553335 PIP4K2BP78356 416 aa13.45□□□□□ -0.26
TMEM260-204ENST00000553335 AKAP12Q02952 1782 aa13.45□□□□□ -0.26
TMEM260-204ENST00000553335 ESCO1Q5FWF5 840 aa13.43□□□□□ -0.26
TMEM260-204ENST00000553335 CABP1Q9NZU7 370 aa13.43□□□□□ -0.26
TMEM260-204ENST00000553335 SLAIN2Q9P270 581 aa13.43□□□□□ -0.26
TMEM260-204ENST00000553335 HDGFL2Q7Z4V5 671 aaPredicted RBP13.42□□□□□ -0.26
TMEM260-204ENST00000553335 TERF2IPQ9NYB0 399 aa13.42□□□□□ -0.26
TMEM260-204ENST00000553335 PHF8Q9UPP1 1060 aa13.42□□□□□ -0.26
TMEM260-204ENST00000553335 MON2Q7Z3U7 1717 aa13.42□□□□□ -0.26
TMEM260-204ENST00000553335 PLEKHG3A1L390 1219 aa13.41□□□□□ -0.26
TMEM260-204ENST00000553335 SLC12A5Q9H2X9 1139 aa13.41□□□□□ -0.26
TMEM260-204ENST00000553335 NGDNQ8NEJ9 315 aaKnown RBP13.4□□□□□ -0.26
TMEM260-204ENST00000553335 PMFBP1Q8TBY8 1022 aa13.4□□□□□ -0.26
TMEM260-204ENST00000553335 ORAI2Q96SN7 254 aa13.4□□□□□ -0.26
TMEM260-204ENST00000553335 ROBO1Q9Y6N7 1651 aa13.4□□□□□ -0.26
TMEM260-204ENST00000553335 DDX10Q13206 875 aaKnown RBP13.39□□□□□ -0.27
TMEM260-204ENST00000553335 ANKRD36BQ8N2N9 1353 aa13.39□□□□□ -0.27
TMEM260-204ENST00000553335 ACEP12821 1306 aa13.39□□□□□ -0.27
TMEM260-204ENST00000553335 POLR3AO14802 1390 aaPredicted RBP13.38□□□□□ -0.27
TMEM260-204ENST00000553335 PANK3Q9H999 370 aa13.38□□□□□ -0.27
TMEM260-204ENST00000553335 NHSL1Q5SYE7 1610 aa13.38□□□□□ -0.27
TMEM260-204ENST00000553335 CPSF1Q10570 1443 aaKnown RBP13.38□□□□□ -0.27
TMEM260-204ENST00000553335 CD163L1Q9NR16 1453 aa13.37□□□□□ -0.27
TMEM260-204ENST00000553335 A0A1W2PP64 1363 aa13.37□□□□□ -0.27
TMEM260-204ENST00000553335 KTN1Q86UP2 1357 aaKnown RBP13.37□□□□□ -0.27
TMEM260-204ENST00000553335 BRINP3Q76B58 766 aa13.37□□□□□ -0.27
TMEM260-204ENST00000553335 CACNB1Q02641 598 aaPredicted RBP13.36□□□□□ -0.27
TMEM260-204ENST00000553335 PSME1Q06323 249 aa13.36□□□□□ -0.27
TMEM260-204ENST00000553335 KIF20BQ96Q89 1820 aa13.36□□□□□ -0.27
TMEM260-204ENST00000553335 NPHP3Q7Z494 1330 aa13.36□□□□□ -0.27
TMEM260-204ENST00000553335 BRD4O60885 1362 aaPredicted RBP13.35□□□□□ -0.27
TMEM260-204ENST00000553335 NRKQ7Z2Y5 1582 aa13.35□□□□□ -0.27
TMEM260-204ENST00000553335 USP6P35125 1406 aa13.34□□□□□ -0.27
TMEM260-204ENST00000553335 EDC4Q6P2E9 1401 aaKnown RBP13.34□□□□□ -0.27
TMEM260-204ENST00000553335 FOXO3O43524 673 aa13.34□□□□□ -0.27
TMEM260-204ENST00000553335 HSPA1LP34931 641 aa13.34□□□□□ -0.27
TMEM260-204ENST00000553335 KLHL34Q8N239 644 aa13.34□□□□□ -0.27
TMEM260-204ENST00000553335 KNSTRNQ9Y448 316 aa13.34□□□□□ -0.27
TMEM260-204ENST00000553335 PHLPP1O60346 1717 aa13.33□□□□□ -0.27
TMEM260-204ENST00000553335 NSD3Q9BZ95 1437 aa13.33□□□□□ -0.28
TMEM260-204ENST00000553335 KRT28Q7Z3Y7 464 aa13.33□□□□□ -0.28
TMEM260-204ENST00000553335 TRPM3Q9HCF6 1732 aaPredicted RBP13.33□□□□□ -0.28
TMEM260-204ENST00000553335 AHDC1Q5TGY3 1603 aaPredicted RBP13.32□□□□□ -0.28
TMEM260-204ENST00000553335 ANKRD26Q9UPS8 1709 aa13.32□□□□□ -0.28
TMEM260-204ENST00000553335 PAK3O75914 559 aaPredicted RBP13.31□□□□□ -0.28
TMEM260-204ENST00000553335 SPOCK2Q92563 424 aa13.31□□□□□ -0.28
TMEM260-204ENST00000553335 CARD14Q9BXL6 1004 aa13.31□□□□□ -0.28
TMEM260-204ENST00000553335 TTC21AQ8NDW8 1320 aa13.31□□□□□ -0.28
TMEM260-204ENST00000553335 PER1O15534 1290 aaPredicted RBP13.3□□□□□ -0.28
TMEM260-204ENST00000553335 CGNL1Q0VF96 1302 aa13.3□□□□□ -0.28
TMEM260-204ENST00000553335 TTC21BQ7Z4L5 1316 aa13.3□□□□□ -0.28
TMEM260-204ENST00000553335 ALS2Q96Q42 1657 aa13.3□□□□□ -0.28
TMEM260-204ENST00000553335 SSH2Q76I76 1423 aa13.3□□□□□ -0.28
TMEM260-204ENST00000553335 PXDNQ92626 1479 aa13.29□□□□□ -0.28
TMEM260-204ENST00000553335 XPCQ01831 940 aaPredicted RBP13.29□□□□□ -0.28
TMEM260-204ENST00000553335 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.29□□□□□ -0.28
TMEM260-204ENST00000553335 DDX17Q92841 729 aaKnown RBP13.29□□□□□ -0.28
TMEM260-204ENST00000553335 SOS2Q07890 1332 aaPredicted RBP13.29□□□□□ -0.28
TMEM260-204ENST00000553335 SBNO1A3KN83 1393 aa13.29□□□□□ -0.28
TMEM260-204ENST00000553335 PIK3C2AO00443 1686 aa13.28□□□□□ -0.28
TMEM260-204ENST00000553335 PLCD3Q8N3E9 789 aa13.28□□□□□ -0.28
TMEM260-204ENST00000553335 NSD2O96028 1365 aa13.28□□□□□ -0.28
TMEM260-204ENST00000553335 USP54Q70EL1 1684 aa13.28□□□□□ -0.28
TMEM260-204ENST00000553335 ABTB2Q8N961 1025 aa13.27□□□□□ -0.29
TMEM260-204ENST00000553335 NPC1L1Q9UHC9 1359 aa13.27□□□□□ -0.29
TMEM260-204ENST00000553335 TNS3Q68CZ2 1445 aa13.27□□□□□ -0.29
TMEM260-204ENST00000553335 COL16A1Q07092 1604 aaPredicted RBP13.26□□□□□ -0.29
TMEM260-204ENST00000553335 DIEXFQ68CQ4 756 aaKnown RBP13.26□□□□□ -0.29
TMEM260-204ENST00000553335 LMOD2Q6P5Q4 547 aa13.26□□□□□ -0.29
TMEM260-204ENST00000553335 ILDR2Q71H61 639 aa13.26□□□□□ -0.29
TMEM260-204ENST00000553335 LRRC59Q96AG4 307 aaKnown RBP13.26□□□□□ -0.29
TMEM260-204ENST00000553335 ARHGEF10O15013 1369 aa13.25□□□□□ -0.29
TMEM260-204ENST00000553335 SPATA31A3Q5VYP0 1347 aa13.25□□□□□ -0.29
TMEM260-204ENST00000553335 FYB1O15117 783 aa13.25□□□□□ -0.29
TMEM260-204ENST00000553335 NLRP13Q86W25 1043 aa13.25□□□□□ -0.29
TMEM260-204ENST00000553335 NME9Q86XW9 330 aa13.25□□□□□ -0.29
TMEM260-204ENST00000553335 COG3Q96JB2 828 aa13.25□□□□□ -0.29
TMEM260-204ENST00000553335 USP31Q70CQ4 1352 aa13.24□□□□□ -0.29
TMEM260-204ENST00000553335 ANP32CO43423 234 aa13.24□□□□□ -0.29
TMEM260-204ENST00000553335 NLRP6P59044 892 aa13.24□□□□□ -0.29
TMEM260-204ENST00000553335 CC2D1BQ5T0F9 858 aaKnown RBP13.24□□□□□ -0.29
TMEM260-204ENST00000553335 MIER1Q8N108 512 aa13.24□□□□□ -0.29
TMEM260-204ENST00000553335 GGNBP2Q9H3C7 697 aa13.24□□□□□ -0.29
TMEM260-204ENST00000553335 MARF1Q9Y4F3 1742 aaKnown RBP13.24□□□□□ -0.29
TMEM260-204ENST00000553335 CNGB1Q14028 1251 aaPredicted RBP13.23□□□□□ -0.29
TMEM260-204ENST00000553335 MORC1Q86VD1 984 aa13.23□□□□□ -0.29
TMEM260-204ENST00000553335 MAP2P11137 1827 aaKnown RBP13.23□□□□□ -0.29
TMEM260-204ENST00000553335 SHPRHQ149N8 1683 aa13.22□□□□□ -0.29
TMEM260-204ENST00000553335 COL22A1Q8NFW1 1626 aaPredicted RBP13.22□□□□□ -0.29
TMEM260-204ENST00000553335 PHRF1Q9P1Y6 1649 aaKnown RBP13.22□□□□□ -0.29
TMEM260-204ENST00000553335 CRYBG1Q9Y4K1 1723 aa13.22□□□□□ -0.29
TMEM260-204ENST00000553335 OVOS2A0A0J9YW53 1432 aa13.22□□□□□ -0.29
TMEM260-204ENST00000553335 OVOS2Q6IE36 1432 aa13.22□□□□□ -0.29
TMEM260-204ENST00000553335 PLCB2Q00722 1185 aa13.21□□□□□ -0.29
TMEM260-204ENST00000553335 RALBP1Q15311 655 aa13.21□□□□□ -0.29
TMEM260-204ENST00000553335 NUTM2GQ5VZR2 741 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms