RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 LMOD2Q6P5Q4 547 aa10.36□□□□□ -0.75
LIMA1-216ENST00000552909 CABP1Q9NZU7 370 aa10.36□□□□□ -0.75
LIMA1-216ENST00000552909 PLEKHG3A1L390 1219 aa10.35□□□□□ -0.75
LIMA1-216ENST00000552909 CABLES1Q8TDN4 633 aa10.35□□□□□ -0.75
LIMA1-216ENST00000552909 TESK2Q96S53 571 aa10.35□□□□□ -0.75
LIMA1-216ENST00000552909 ANP32CO43423 234 aa10.35□□□□□ -0.75
LIMA1-216ENST00000552909 MEX3CQ5U5Q3 659 aaKnown RBP10.35□□□□□ -0.75
LIMA1-216ENST00000552909 TOPAZ1Q8N9V7 1692 aa10.34□□□□□ -0.75
LIMA1-216ENST00000552909 PPIP5K1Q6PFW1 1433 aa10.34□□□□□ -0.75
LIMA1-216ENST00000552909 ITSN1Q15811 1721 aa10.34□□□□□ -0.75
LIMA1-216ENST00000552909 PAK3O75914 559 aaPredicted RBP10.34□□□□□ -0.75
LIMA1-216ENST00000552909 TNS3Q68CZ2 1445 aa10.34□□□□□ -0.75
LIMA1-216ENST00000552909 POTEAQ6S8J7 498 aa10.33□□□□□ -0.76
LIMA1-216ENST00000552909 C8orf37Q96NL8 207 aa10.33□□□□□ -0.76
LIMA1-216ENST00000552909 SALL2Q9Y467 1007 aaPredicted RBP10.33□□□□□ -0.76
LIMA1-216ENST00000552909 SBNO1A3KN83 1393 aa10.33□□□□□ -0.76
LIMA1-216ENST00000552909 POLR3AO14802 1390 aaPredicted RBP10.33□□□□□ -0.76
LIMA1-216ENST00000552909 USP47Q96K76 1375 aa10.33□□□□□ -0.76
LIMA1-216ENST00000552909 SBNO2Q9Y2G9 1366 aa10.33□□□□□ -0.76
LIMA1-216ENST00000552909 TRPM3Q9HCF6 1732 aaPredicted RBP10.33□□□□□ -0.76
LIMA1-216ENST00000552909 NOP58Q9Y2X3 529 aaKnown RBP10.33□□□□□ -0.76
LIMA1-216ENST00000552909 COL22A1Q8NFW1 1626 aaPredicted RBP10.33□□□□□ -0.76
LIMA1-216ENST00000552909 NUTM2GQ5VZR2 741 aa10.32□□□□□ -0.76
LIMA1-216ENST00000552909 EIF4G2P78344 907 aaKnown RBP eCLIP10.31□□□□□ -0.76
LIMA1-216ENST00000552909 NBR1Q14596 966 aa10.31□□□□□ -0.76
LIMA1-216ENST00000552909 AFF2P51816 1311 aa10.31□□□□□ -0.76
LIMA1-216ENST00000552909 HSPA5P11021 654 aaKnown RBP10.31□□□□□ -0.76
LIMA1-216ENST00000552909 NGLY1Q96IV0 654 aa10.31□□□□□ -0.76
LIMA1-216ENST00000552909 SLC12A5Q9H2X9 1139 aa10.31□□□□□ -0.76
LIMA1-216ENST00000552909 ALS2Q96Q42 1657 aa10.3□□□□□ -0.76
LIMA1-216ENST00000552909 ARHGEF10O15013 1369 aa10.3□□□□□ -0.76
LIMA1-216ENST00000552909 TMC1Q8TDI8 760 aa10.29□□□□□ -0.76
LIMA1-216ENST00000552909 ATAD2Q6PL18 1390 aa10.29□□□□□ -0.76
LIMA1-216ENST00000552909 IRX6P78412 446 aaPredicted RBP10.29□□□□□ -0.76
LIMA1-216ENST00000552909 PPP4R2Q9NY27 417 aa10.29□□□□□ -0.76
LIMA1-216ENST00000552909 HAP1P54257 671 aaPredicted RBP10.28□□□□□ -0.76
LIMA1-216ENST00000552909 ABTB2Q8N961 1025 aa10.28□□□□□ -0.76
LIMA1-216ENST00000552909 USP6P35125 1406 aa10.28□□□□□ -0.76
LIMA1-216ENST00000552909 EP400Q96L91 3159 aa10.27□□□□□ -0.76
LIMA1-216ENST00000552909 CD163L1Q9NR16 1453 aa10.27□□□□□ -0.77
LIMA1-216ENST00000552909 RTL5Q5HYW3 569 aaPredicted RBP10.27□□□□□ -0.77
LIMA1-216ENST00000552909 ZNF772Q68DY9 489 aaPredicted RBP10.27□□□□□ -0.77
LIMA1-216ENST00000552909 FNBP4Q8N3X1 1017 aaPredicted RBP10.27□□□□□ -0.77
LIMA1-216ENST00000552909 CPSF1Q10570 1443 aaKnown RBP10.27□□□□□ -0.77
LIMA1-216ENST00000552909 SSH2Q76I76 1423 aa10.27□□□□□ -0.77
LIMA1-216ENST00000552909 FAM83GA6ND36 823 aa10.26□□□□□ -0.77
LIMA1-216ENST00000552909 UBE2Q2Q8WVN8 375 aa10.26□□□□□ -0.77
LIMA1-216ENST00000552909 ABCA3Q99758 1704 aa10.26□□□□□ -0.77
LIMA1-216ENST00000552909 MARF1Q9Y4F3 1742 aaKnown RBP10.26□□□□□ -0.77
LIMA1-216ENST00000552909 TMF1P82094 1093 aa10.26□□□□□ -0.77
LIMA1-216ENST00000552909 ZNF692Q9BU19 519 aaPredicted RBP10.26□□□□□ -0.77
LIMA1-216ENST00000552909 QTRT2Q9H974 415 aaKnown RBP10.26□□□□□ -0.77
LIMA1-216ENST00000552909 USP21Q9UK80 565 aa10.26□□□□□ -0.77
LIMA1-216ENST00000552909 BCL9LQ86UU0 1499 aa10.26□□□□□ -0.77
LIMA1-216ENST00000552909 TTC21BQ7Z4L5 1316 aa10.26□□□□□ -0.77
LIMA1-216ENST00000552909 PUS7Q96PZ0 661 aaKnown RBP10.25□□□□□ -0.77
LIMA1-216ENST00000552909 KTN1Q86UP2 1357 aaKnown RBP10.25□□□□□ -0.77
LIMA1-216ENST00000552909 CRYBG1Q9Y4K1 1723 aa10.25□□□□□ -0.77
LIMA1-216ENST00000552909 AKAP12Q02952 1782 aa10.25□□□□□ -0.77
LIMA1-216ENST00000552909 ZC3H6P61129 1189 aaKnown RBP10.25□□□□□ -0.77
LIMA1-216ENST00000552909 HNRNPUQ00839 825 aaKnown RBP eCLIP10.25□□□□□ -0.77
LIMA1-216ENST00000552909 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.25□□□□□ -0.77
LIMA1-216ENST00000552909 CCDC136Q96JN2 1154 aa10.25□□□□□ -0.77
LIMA1-216ENST00000552909 ZRANB1Q9UGI0 708 aa10.25□□□□□ -0.77
LIMA1-216ENST00000552909 SLC24A1O60721 1099 aa10.24□□□□□ -0.77
LIMA1-216ENST00000552909 NLRP6P59044 892 aa10.24□□□□□ -0.77
LIMA1-216ENST00000552909 A0A1W2PP64 1363 aa10.24□□□□□ -0.77
LIMA1-216ENST00000552909 SLIT2O94813 1529 aa10.23□□□□□ -0.77
LIMA1-216ENST00000552909 C11orf95C9JLR9 678 aaPredicted RBP10.23□□□□□ -0.77
LIMA1-216ENST00000552909 GCP02774 474 aa10.23□□□□□ -0.77
LIMA1-216ENST00000552909 CHRNA2Q15822 529 aa10.23□□□□□ -0.77
LIMA1-216ENST00000552909 NLRP13Q86W25 1043 aa10.23□□□□□ -0.77
LIMA1-216ENST00000552909 PIK3C2AO00443 1686 aa10.23□□□□□ -0.77
LIMA1-216ENST00000552909 KIAA0232Q92628 1395 aa10.22□□□□□ -0.77
LIMA1-216ENST00000552909 RXRBP28702 533 aa10.22□□□□□ -0.77
LIMA1-216ENST00000552909 HDGFL2Q7Z4V5 671 aaPredicted RBP10.22□□□□□ -0.77
LIMA1-216ENST00000552909 IL27Q8NEV9 243 aa10.22□□□□□ -0.77
LIMA1-216ENST00000552909 USP19O94966 1318 aa10.22□□□□□ -0.77
LIMA1-216ENST00000552909 MON2Q7Z3U7 1717 aa10.22□□□□□ -0.77
LIMA1-216ENST00000552909 PHRF1Q9P1Y6 1649 aaKnown RBP10.22□□□□□ -0.77
LIMA1-216ENST00000552909 BRD4O60885 1362 aaPredicted RBP10.22□□□□□ -0.77
LIMA1-216ENST00000552909 NME9Q86XW9 330 aa10.22□□□□□ -0.77
LIMA1-216ENST00000552909 UNC5CLQ8IV45 518 aa10.22□□□□□ -0.77
LIMA1-216ENST00000552909 POLR3GLQ9BT43 218 aa10.22□□□□□ -0.77
LIMA1-216ENST00000552909 PRDM11Q9NQV5 511 aa10.22□□□□□ -0.77
LIMA1-216ENST00000552909 BTG4Q9NY30 223 aa10.22□□□□□ -0.77
LIMA1-216ENST00000552909 TERF2IPQ9NYB0 399 aa10.22□□□□□ -0.77
LIMA1-216ENST00000552909 NRKQ7Z2Y5 1582 aa10.22□□□□□ -0.77
LIMA1-216ENST00000552909 SOX12O15370 315 aa10.21□□□□□ -0.77
LIMA1-216ENST00000552909 TRPC5Q9UL62 973 aaPredicted RBP10.21□□□□□ -0.77
LIMA1-216ENST00000552909 ATRNO75882 1429 aa10.21□□□□□ -0.78
LIMA1-216ENST00000552909 RBM6P78332 1123 aaKnown RBP10.21□□□□□ -0.78
LIMA1-216ENST00000552909 PLCH1Q4KWH8 1693 aa10.21□□□□□ -0.78
LIMA1-216ENST00000552909 TTC21AQ8NDW8 1320 aa10.2□□□□□ -0.78
LIMA1-216ENST00000552909 SOCS7O14512 581 aa10.2□□□□□ -0.78
LIMA1-216ENST00000552909 CDCA8Q53HL2 280 aa10.2□□□□□ -0.78
LIMA1-216ENST00000552909 ANP32AP39687 249 aaKnown RBP10.19□□□□□ -0.78
LIMA1-216ENST00000552909 GJD4Q96KN9 370 aaPredicted RBP10.19□□□□□ -0.78
LIMA1-216ENST00000552909 WASHC2AQ641Q2 1341 aa10.19□□□□□ -0.78
LIMA1-216ENST00000552909 NINLQ9Y2I6 1382 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms