RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 CFAP53Q96M91 514 aa6.07□□□□□ -1.44
LIMA1-214ENST00000552783 TRAPPC8Q9Y2L5 1435 aa6.07□□□□□ -1.44
LIMA1-214ENST00000552783 CD109Q6YHK3 1445 aa6.07□□□□□ -1.44
LIMA1-214ENST00000552783 ZBTB7CA1YPR0 619 aa6.07□□□□□ -1.44
LIMA1-214ENST00000552783 XPCQ01831 940 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-214ENST00000552783 CYB5RLQ6IPT4 315 aa6.07□□□□□ -1.44
LIMA1-214ENST00000552783 ATF7IPQ6VMQ6 1270 aa6.07□□□□□ -1.44
LIMA1-214ENST00000552783 SNX21Q969T3 373 aa6.07□□□□□ -1.44
LIMA1-214ENST00000552783 PRDM4Q9UKN5 801 aa6.07□□□□□ -1.44
LIMA1-214ENST00000552783 TRIM35Q9UPQ4 493 aa6.07□□□□□ -1.44
LIMA1-214ENST00000552783 NUCB1Q02818 461 aa6.06□□□□□ -1.44
LIMA1-214ENST00000552783 PPP1R9BQ96SB3 815 aa6.06□□□□□ -1.44
LIMA1-214ENST00000552783 FAM13BQ9NYF5 915 aa6.06□□□□□ -1.44
LIMA1-214ENST00000552783 PTPRTO14522 1441 aa6.06□□□□□ -1.44
LIMA1-214ENST00000552783 TBC1D9Q6ZT07 1266 aa6.06□□□□□ -1.44
LIMA1-214ENST00000552783 PDCL3Q9H2J4 239 aa6.06□□□□□ -1.44
LIMA1-214ENST00000552783 R3HCC1Q9Y3T6 440 aaKnown RBP6.06□□□□□ -1.44
LIMA1-214ENST00000552783 OFD1O75665 1012 aa6.06□□□□□ -1.44
LIMA1-214ENST00000552783 ZSCAN30Q86W11 494 aa6.06□□□□□ -1.44
LIMA1-214ENST00000552783 NGEFQ8N5V2 710 aa6.06□□□□□ -1.44
LIMA1-214ENST00000552783 RBSNQ9H1K0 784 aa6.06□□□□□ -1.44
LIMA1-214ENST00000552783 RBM27Q9P2N5 1060 aaKnown RBP6.06□□□□□ -1.44
LIMA1-214ENST00000552783 DDX49Q9Y6V7 483 aaKnown RBP6.06□□□□□ -1.44
LIMA1-214ENST00000552783 DUOX2Q9NRD8 1548 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 ZNF518AQ6AHZ1 1483 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 BAG4O95429 457 aaKnown RBP6.05□□□□□ -1.44
LIMA1-214ENST00000552783 CHD1LQ86WJ1 897 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 NSFL1CQ9UNZ2 370 aaKnown RBP6.05□□□□□ -1.44
LIMA1-214ENST00000552783 ATAD2Q6PL18 1390 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 TPM2P07951 284 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 CCDC27Q2M243 656 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 ANKRD45Q5TZF3 282 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 CAVIN1Q6NZI2 390 aaKnown RBP6.05□□□□□ -1.44
LIMA1-214ENST00000552783 SIRT2Q8IXJ6 389 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 GBP4Q96PP9 640 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 ABCA6Q8N139 1617 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 K7ELQ4 463 aaPredicted RBP6.05□□□□□ -1.44
LIMA1-214ENST00000552783 FBLN1P23142 703 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 AAMPQ13685 434 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 MCTP1Q6DN14 999 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 PLEKHF1Q96S99 279 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 DDX19BQ9UMR2 479 aa6.05□□□□□ -1.44
LIMA1-214ENST00000552783 TRPM2O94759 1503 aa6.04□□□□□ -1.44
LIMA1-214ENST00000552783 NCLP19338 710 aaKnown RBP6.04□□□□□ -1.44
LIMA1-214ENST00000552783 PRIM1P49642 420 aaKnown RBP6.04□□□□□ -1.44
LIMA1-214ENST00000552783 CCDC173Q0VFZ6 552 aa6.04□□□□□ -1.44
LIMA1-214ENST00000552783 MPNDQ8N594 471 aa6.04□□□□□ -1.44
LIMA1-214ENST00000552783 SOX12O15370 315 aa6.04□□□□□ -1.44
LIMA1-214ENST00000552783 NOS1P29475 1434 aa6.04□□□□□ -1.44
LIMA1-214ENST00000552783 TMPOP42166 694 aaKnown RBP6.04□□□□□ -1.44
LIMA1-214ENST00000552783 ZSCAN23Q3MJ62 389 aa6.04□□□□□ -1.44
LIMA1-214ENST00000552783 TSC1Q92574 1164 aa6.04□□□□□ -1.44
LIMA1-214ENST00000552783 CABP2Q9NPB3 220 aa6.04□□□□□ -1.44
LIMA1-214ENST00000552783 ISY1Q9ULR0 285 aaKnown RBP6.04□□□□□ -1.44
LIMA1-214ENST00000552783 MINK1Q8N4C8 1332 aaPredicted RBP6.04□□□□□ -1.44
LIMA1-214ENST00000552783 PPIP5K1Q6PFW1 1433 aa6.04□□□□□ -1.44
LIMA1-214ENST00000552783 ZGPATQ8N5A5 531 aaKnown RBP6.04□□□□□ -1.44
LIMA1-214ENST00000552783 PRDM10Q9NQV6 1147 aa6.04□□□□□ -1.44
LIMA1-214ENST00000552783 PLEKHG5O94827 1062 aa6.03□□□□□ -1.44
LIMA1-214ENST00000552783 GSPT1P15170 499 aaKnown RBP6.03□□□□□ -1.44
LIMA1-214ENST00000552783 KLHL40Q2TBA0 621 aa6.03□□□□□ -1.44
LIMA1-214ENST00000552783 BMP2KLQ5H9B9 411 aa6.03□□□□□ -1.44
LIMA1-214ENST00000552783 FOXD4L5Q5VV16 416 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-214ENST00000552783 C16orf71Q8IYS4 520 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-214ENST00000552783 GPT2Q8TD30 523 aa6.03□□□□□ -1.44
LIMA1-214ENST00000552783 FOXD4L4Q8WXT5 416 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-214ENST00000552783 THUMPD2Q9BTF0 503 aaKnown RBP6.03□□□□□ -1.44
LIMA1-214ENST00000552783 GGNBP2Q9H3C7 697 aa6.03□□□□□ -1.44
LIMA1-214ENST00000552783 LMBRD1Q9NUN5 540 aa6.03□□□□□ -1.44
LIMA1-214ENST00000552783 CIZ1Q9ULV3 898 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-214ENST00000552783 ELL2O00472 640 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-214ENST00000552783 RAPGEF3O95398 923 aa6.03□□□□□ -1.44
LIMA1-214ENST00000552783 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.03□□□□□ -1.44
LIMA1-214ENST00000552783 MAPK8IP2Q13387 824 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-214ENST00000552783 SKOR2Q2VWA4 1001 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-214ENST00000552783 TSPYL6Q8N831 410 aa6.03□□□□□ -1.44
LIMA1-214ENST00000552783 OTUD7AQ8TE49 926 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-214ENST00000552783 ZDHHC9Q9Y397 364 aa6.03□□□□□ -1.44
LIMA1-214ENST00000552783 ZBTB7BO15156 539 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-214ENST00000552783 MSNP26038 577 aaKnown RBP6.02□□□□□ -1.45
LIMA1-214ENST00000552783 HOXD11P31277 338 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-214ENST00000552783 ESF1Q9H501 851 aaKnown RBP6.02□□□□□ -1.45
LIMA1-214ENST00000552783 UQCRHLA0A096LP55 91 aa6.02□□□□□ -1.45
LIMA1-214ENST00000552783 UQCRHP07919 91 aa6.02□□□□□ -1.45
LIMA1-214ENST00000552783 MAP3K4Q9Y6R4 1608 aa6.02□□□□□ -1.45
LIMA1-214ENST00000552783 NUTM2FA1L443 756 aa6.01□□□□□ -1.45
LIMA1-214ENST00000552783 FAM177BA6PVY3 158 aa6.01□□□□□ -1.45
LIMA1-214ENST00000552783 PRPF40AO75400 957 aaKnown RBP6.01□□□□□ -1.45
LIMA1-214ENST00000552783 CLEC17AQ6ZS10 378 aa6.01□□□□□ -1.45
LIMA1-214ENST00000552783 RNF214Q8ND24 703 aa6.01□□□□□ -1.45
LIMA1-214ENST00000552783 CNKSR2Q8WXI2 1034 aa6.01□□□□□ -1.45
LIMA1-214ENST00000552783 TMEM63CQ9P1W3 806 aa6.01□□□□□ -1.45
LIMA1-214ENST00000552783 NOL7Q9UMY1 257 aaKnown RBP6.01□□□□□ -1.45
LIMA1-214ENST00000552783 ZNF445P59923 1031 aa6.01□□□□□ -1.45
LIMA1-214ENST00000552783 PDLIM2Q96JY6 352 aa6.01□□□□□ -1.45
LIMA1-214ENST00000552783 CFAP65Q6ZU64 1925 aaKnown RBP6.01□□□□□ -1.45
LIMA1-214ENST00000552783 ADGRB2O60241 1585 aa6.01□□□□□ -1.45
LIMA1-214ENST00000552783 CYP2E1P05181 493 aaPredicted RBP6.01□□□□□ -1.45
LIMA1-214ENST00000552783 CALD1Q05682 793 aaKnown RBP6.01□□□□□ -1.45
LIMA1-214ENST00000552783 MROH2AA6NES4 1674 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms