RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 COG6Q9Y2V7 657 aa23.29■■□□□ 1.32
VIM-209ENST00000544301 ESF1Q9H501 851 aaKnown RBP23.28■■□□□ 1.32
VIM-209ENST00000544301 TMPOP42166 694 aaKnown RBP23.27■■□□□ 1.32
VIM-209ENST00000544301 CLUAP1Q96AJ1 413 aa23.27■■□□□ 1.32
VIM-209ENST00000544301 METP08581 1390 aa23.27■■□□□ 1.32
VIM-209ENST00000544301 DIAPH1O60610 1272 aaKnown RBP23.26■■□□□ 1.31
VIM-209ENST00000544301 IGHDP01880 384 aa23.26■■□□□ 1.31
VIM-209ENST00000544301 TRIM35Q9UPQ4 493 aa23.25■■□□□ 1.31
VIM-209ENST00000544301 MAPK8IP3Q9UPT6 1336 aa23.24■■□□□ 1.31
VIM-209ENST00000544301 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.24■■□□□ 1.31
VIM-209ENST00000544301 WASLO00401 505 aaPredicted RBP23.23■■□□□ 1.31
VIM-209ENST00000544301 BCL2L13Q9BXK5 485 aa23.23■■□□□ 1.31
VIM-209ENST00000544301 FAM161AQ3B820 660 aa23.22■■□□□ 1.31
VIM-209ENST00000544301 RLBP1P12271 317 aa23.21■■□□□ 1.31
VIM-209ENST00000544301 TNNQ9UQP3 1299 aa23.21■■□□□ 1.31
VIM-209ENST00000544301 CT47B1P0C2W7 299 aaPredicted RBP23.21■■□□□ 1.31
VIM-209ENST00000544301 RGS3P49796 1198 aa23.21■■□□□ 1.31
VIM-209ENST00000544301 AAMPQ13685 434 aa23.21■■□□□ 1.31
VIM-209ENST00000544301 TXNDC2Q86VQ3 553 aa23.21■■□□□ 1.31
VIM-209ENST00000544301 TSR2Q969E8 191 aaKnown RBP23.21■■□□□ 1.31
VIM-209ENST00000544301 CPSF1Q10570 1443 aaKnown RBP23.21■■□□□ 1.31
VIM-209ENST00000544301 TNRQ92752 1358 aa23.21■■□□□ 1.31
VIM-209ENST00000544301 CDC42BPGQ6DT37 1551 aa23.2■■□□□ 1.3
VIM-209ENST00000544301 HDGFP51858 240 aaKnown RBP23.2■■□□□ 1.3
VIM-209ENST00000544301 C8orf34Q49A92 452 aa23.2■■□□□ 1.3
VIM-209ENST00000544301 PNNQ9H307 717 aaKnown RBP23.2■■□□□ 1.3
VIM-209ENST00000544301 POLKQ9UBT6 870 aa23.2■■□□□ 1.3
VIM-209ENST00000544301 PPIP5K1Q6PFW1 1433 aa23.2■■□□□ 1.3
VIM-209ENST00000544301 KNDC1Q76NI1 1749 aa23.19■■□□□ 1.3
VIM-209ENST00000544301 IL16Q14005 1332 aa23.19■■□□□ 1.3
VIM-209ENST00000544301 FAM135BQ49AJ0 1406 aa23.19■■□□□ 1.3
VIM-209ENST00000544301 SIRT1Q96EB6 747 aa23.19■■□□□ 1.3
VIM-209ENST00000544301 EDC4Q6P2E9 1401 aaKnown RBP23.19■■□□□ 1.3
VIM-209ENST00000544301 TECPR2O15040 1411 aa23.18■■□□□ 1.3
VIM-209ENST00000544301 RIPK4P57078 832 aa23.18■■□□□ 1.3
VIM-209ENST00000544301 FBLN1P23142 703 aa23.17■■□□□ 1.3
VIM-209ENST00000544301 FCHSD2O94868 740 aa23.17■■□□□ 1.3
VIM-209ENST00000544301 EXOSC9Q06265 439 aaKnown RBP23.17■■□□□ 1.3
VIM-209ENST00000544301 NUDT16Q96DE0 195 aaKnown RBP23.15■■□□□ 1.3
VIM-209ENST00000544301 CPS1P31327 1500 aa23.15■■□□□ 1.3
VIM-209ENST00000544301 TMEM2Q9UHN6 1383 aa23.15■■□□□ 1.3
VIM-209ENST00000544301 PPM1GO15355 546 aaPredicted RBP23.15■■□□□ 1.3
VIM-209ENST00000544301 LRRC7Q96NW7 1537 aa23.15■■□□□ 1.3
VIM-209ENST00000544301 UBR1Q8IWV7 1749 aa23.15■■□□□ 1.3
VIM-209ENST00000544301 MAP2P11137 1827 aaKnown RBP23.14■■□□□ 1.29
VIM-209ENST00000544301 ZKSCAN2Q63HK3 967 aa23.14■■□□□ 1.29
VIM-209ENST00000544301 PMFBP1Q8TBY8 1022 aa23.14■■□□□ 1.29
VIM-209ENST00000544301 RSPH6AQ9H0K4 717 aa23.14■■□□□ 1.29
VIM-209ENST00000544301 PCDHB15Q9Y5E8 787 aa23.14■■□□□ 1.29
VIM-209ENST00000544301 NBR1Q14596 966 aa23.13■■□□□ 1.29
VIM-209ENST00000544301 NME9Q86XW9 330 aa23.13■■□□□ 1.29
VIM-209ENST00000544301 DDRGK1Q96HY6 314 aa23.13■■□□□ 1.29
VIM-209ENST00000544301 CCDC61Q9Y6R9 512 aa23.12■■□□□ 1.29
VIM-209ENST00000544301 PRKAR2BP31323 418 aa23.11■■□□□ 1.29
VIM-209ENST00000544301 MVPQ14764 893 aaKnown RBP23.11■■□□□ 1.29
VIM-209ENST00000544301 NCKAP5LQ9HCH0 1330 aa23.11■■□□□ 1.29
VIM-209ENST00000544301 SMC4Q9NTJ3 1288 aa23.11■■□□□ 1.29
VIM-209ENST00000544301 MON2Q7Z3U7 1717 aa23.1■■□□□ 1.29
VIM-209ENST00000544301 DZIP1LQ8IYY4 767 aaKnown RBP23.1■■□□□ 1.29
VIM-209ENST00000544301 ZRANB1Q9UGI0 708 aa23.1■■□□□ 1.29
VIM-209ENST00000544301 EMILIN1Q9Y6C2 1016 aa23.1■■□□□ 1.29
VIM-209ENST00000544301 SSH1Q8WYL5 1049 aa23.09■■□□□ 1.29
VIM-209ENST00000544301 AATKQ6ZMQ8 1374 aa23.09■■□□□ 1.29
VIM-209ENST00000544301 ADAMTS13Q76LX8 1427 aa23.08■■□□□ 1.29
VIM-209ENST00000544301 FTSJ3Q8IY81 847 aaKnown RBP23.08■■□□□ 1.28
VIM-209ENST00000544301 CDK12Q9NYV4 1490 aaPredicted RBP23.07■■□□□ 1.28
VIM-209ENST00000544301 ROBO2Q9HCK4 1378 aa23.07■■□□□ 1.28
VIM-209ENST00000544301 IL13P35225 146 aa23.07■■□□□ 1.28
VIM-209ENST00000544301 AKAP12Q02952 1782 aa23.07■■□□□ 1.28
VIM-209ENST00000544301 NEFMP07197 916 aa23.06■■□□□ 1.28
VIM-209ENST00000544301 PRR36Q9H6K5 1346 aa23.06■■□□□ 1.28
VIM-209ENST00000544301 COG3Q96JB2 828 aa23.06■■□□□ 1.28
VIM-209ENST00000544301 HMOX1P09601 288 aa23.05■■□□□ 1.28
VIM-209ENST00000544301 TRIM27P14373 513 aa23.05■■□□□ 1.28
VIM-209ENST00000544301 PHACTR3Q96KR7 559 aa23.05■■□□□ 1.28
VIM-209ENST00000544301 ITSN1Q15811 1721 aa23.05■■□□□ 1.28
VIM-209ENST00000544301 NFE2L2Q16236 605 aa23.05■■□□□ 1.28
VIM-209ENST00000544301 RWDD1Q9H446 243 aaPredicted RBP23.05■■□□□ 1.28
VIM-209ENST00000544301 C3P01024 1663 aa23.05■■□□□ 1.28
VIM-209ENST00000544301 ZNF692Q9BU19 519 aaPredicted RBP23.04■■□□□ 1.28
VIM-209ENST00000544301 VIRMAQ69YN4 1812 aaKnown RBP23.04■■□□□ 1.28
VIM-209ENST00000544301 ATF7IPQ6VMQ6 1270 aa23.03■■□□□ 1.28
VIM-209ENST00000544301 PLEKHG1Q9ULL1 1385 aa23.03■■□□□ 1.28
VIM-209ENST00000544301 LTKP29376 864 aa23.03■■□□□ 1.28
VIM-209ENST00000544301 NOB1Q9ULX3 412 aaKnown RBP23.03■■□□□ 1.28
VIM-209ENST00000544301 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.01■■□□□ 1.27
VIM-209ENST00000544301 RRS1Q15050 365 aaKnown RBP23■■□□□ 1.27
VIM-209ENST00000544301 PDZRN3Q9UPQ7 1066 aa23■■□□□ 1.27
VIM-209ENST00000544301 ALDH1L2Q3SY69 923 aa23■■□□□ 1.27
VIM-209ENST00000544301 DDX19BQ9UMR2 479 aa22.99■■□□□ 1.27
VIM-209ENST00000544301 KIF16BQ96L93 1317 aa22.98■■□□□ 1.27
VIM-209ENST00000544301 CEBPAP49715 358 aaPredicted RBP22.98■■□□□ 1.27
VIM-209ENST00000544301 LAS1LQ9Y4W2 734 aaKnown RBP22.98■■□□□ 1.27
VIM-209ENST00000544301 CALD1Q05682 793 aaKnown RBP22.97■■□□□ 1.27
VIM-209ENST00000544301 ITPRIPQ8IWB1 547 aa22.97■■□□□ 1.27
VIM-209ENST00000544301 IPO8O15397 1037 aaKnown RBP22.97■■□□□ 1.27
VIM-209ENST00000544301 TOPAZ1Q8N9V7 1692 aa22.96■■□□□ 1.27
VIM-209ENST00000544301 THUMPD2Q9BTF0 503 aaKnown RBP22.96■■□□□ 1.27
VIM-209ENST00000544301 RTL5Q5HYW3 569 aaPredicted RBP22.96■■□□□ 1.27
VIM-209ENST00000544301 ZNF428Q96B54 188 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms